From The Scripps Institution of Oceanography At The University of California-San Diego : “New Study Provides First Comprehensive Look at Oxygen Loss on Coral Reefs”
From The Scripps Institution of Oceanography
At
The University of California-San Diego
3.16.23
Brittany Hook
bhook@ucsd.edu
Scripps Oceanography scientists and collaborators provide first-of-its-kind assessment of hypoxia-low oxygen levels- across 32 coral reef sites around the world.
Coral reefs at a study site off Taiping Island, South China Sea. Photo: Yi Bei Liang.
A new study is providing an unprecedented examination of oxygen loss on coral reefs around the globe under ocean warming. Led by researchers at UC San Diego’s Scripps Institution of Oceanography and a large team of national and international colleagues, the study captures the current state of hypoxia—or low oxygen levels—at 32 different sites, and reveals that hypoxia is already pervasive on many reefs.
The overall decline of oxygen content across the world’s oceans and coastal waters—a process known as ocean deoxygenation—has been well documented, but hypoxia on coral reefs has been relatively underexplored. Oxygen loss in the ocean is predicted to threaten marine ecosystems globally, though more research is needed to better understand the biological impacts on tropical corals and coral reefs.
The study, published March 16 in the journal Nature Climate Change [below], is the first to document oxygen conditions on coral reef ecosystems at this scale.
Members of Scripps Oceanography’s SCOOBY Lab check on an instrument at Dongsha Atoll in 2018. Pictured left to right: Ariel Pezner, Travis Courtney, and Samuel Kekuewa. Research at this site was done in collaboration with National Sun Yat-sen University and National Taiwan Ocean University. Photo: Andreas Andersson.
“This study is unique because our lab worked with a number of collaborators to compile this global oxygen dataset especially focused on coral reefs—no one has really done that on a global scale before with this number of datasets,” said marine scientist Ariel Pezner, now a postdoctoral fellow at the Smithsonian Marine Station in Florida. “We were surprised to find that a lot of coral reefs are already experiencing what we would define as hypoxia today under current conditions.”
The authors found that low oxygen levels are already happening in some reef habitats now, and are expected to get worse if ocean temperatures continue to warm due to climate change. They also used models of four different climate change scenarios to show that projected ocean warming and deoxygenation will substantially increase the duration, intensity, and severity of hypoxia on coral reefs by the year 2100.
The analysis was led by Pezner while she was a PhD student at Scripps Oceanography, where she worked in the Scripps Coastal and Open Ocean BiogeochemistrY Research (SCOOBY) lab alongside biogeochemist Andreas Andersson.
Pezner and colleagues used autonomous sensor data to explore oxygen variability and hypoxia exposure at 32 diverse reef sites across 12 locations in waters off Japan, Hawaii, Panama, Palmyra, Taiwan, and elsewhere. Many of the datasets were collected using SeapHOx sensors, instruments originally developed by the lab of Scripps Oceanography researcher Todd Martz. These and other autonomous sensors were deployed in different coral reef habitats, where they measured temperature, salinity, pH, and oxygen levels every 30 minutes.
The SCOOBY lab and partners collected most of the data in an effort to characterize seawater chemistry and reef metabolism in different coral reef environments. The international partners were instrumental in facilitating research logistics and access to many study sites. Several contributors also shared data from their own studies. At Scripps Oceanography, the Martz Lab, Smith Lab, and Tresguerres Lab all made significant contributions to the study.
Historically, hypoxia has been defined by a very specific concentration cutoff of oxygen in the water—less than two milligrams of oxygen per liter—a threshold that was determined in the 1950s. The researchers note that one universal threshold may not be applicable for all environments or all reefs or all ecosystems, and they explored the possibility of four different hypoxia thresholds: weak (5 mg/L), mild (4 mg/L), moderate (3 mg/L), and severe hypoxia (2 mg/L).
Based on these thresholds, they found that more than 84 percent of the reefs in this study experienced “weak to moderate” hypoxia and 13 percent experienced “severe” hypoxia at some point during the data collection period.
New Study Examines Oxygen Loss on Coral Reefs.
A new study led by Scripps Oceanography scientists, alumni, and colleagues is providing an unprecedented examination of oxygen loss on coral reefs around the globe under ocean warming.
As the researchers expected, oxygen was lowest in the early morning at all locations and highest in the mid-afternoon as a result of nighttime respiration and daytime photosynthesis, respectively. During the day when primary producers on the reef have sunlight, they photosynthesize and produce oxygen, said Pezner. But at night, when there is no sunlight, there is no oxygen production and everything on the reef is respiring—breathing in oxygen and breathing out carbon dioxide—resulting in a less oxygenated environment, and sometimes a dip into hypoxia.
This is a normal process, said Andersson, the study’s senior author, but as ocean temperature increases, the seawater can hold less oxygen while the biological demand for oxygen will increase, exacerbating this nighttime hypoxia.
“Imagine that you’re a person who is used to sea-level conditions, and then every night you have to go to sleep somewhere in the Rocky Mountains, where the air has less oxygen. This is similar to what these corals are experiencing at nighttime and in the early morning when they experience hypoxia,” said Andersson. “And in the future, if the duration and intensity of these hypoxic events gets worse, then it might be like sleeping on Mount Everest every night.”
The researchers found that as global temperatures continue to rise and marine heat waves become more frequent and severe, low oxygen conditions on coral reefs are likely to become more common. Using projections adopted from climate models, the team calculated that by the year 2100, the total number of hypoxic observations on these reefs will increase under all warming scenarios, ranging from an increase of 13 to 42 percent under one scenario to 97 to 287 percent under a more extreme scenario relative to now.
A SeapHOx instrument deployed by the team on a coral reef off Okinawa, Japan. Sensors on the instrument measured temperature, salinity, pH, and oxygen levels every 30 minutes. Research at this site was done in collaboration with the Okinawa Institute of Science and Technology. Photo: Max Rintoul.
The researchers said that continued and additional oxygen measurements on coral reefs over different seasons and longer time scales will be “imperative” for establishing baseline conditions, tracking potential hypoxic events, and better predicting future impacts on reef ecology, health, and function.
“Baseline oxygen conditions varied widely among our reef habitats, suggesting that a singular definition of ‘hypoxia’ may not be reasonable for all environments,” said Pezner. “Determining which thresholds are relevant will be important moving forward in making predictions about how reefs might change under warming and oxygen loss.”
This research was funded mainly by the National Science Foundation, and Pezner’s graduate studies were supported by the National Science Foundation Graduate Research Fellowship and a Philanthropic Educational Organization (P.E.O.) International Scholar Award.
This study involved a total of 22 authors representing 14 different research organizations and universities including UC San Diego; University of Puerto Rico at Mayagüez; NOAA Pacific Islands Fisheries Science Center; National Taiwan Ocean University; Georgia Southern University; University of Montana; Smithsonian Tropical Research Institute; National Sun Yat-sen University; Okinawa Institute of Science and Technology; Sea Education Association; Monterey Bay Aquarium Research Institute; National Taiwan University; and the U.S. Geological Survey.
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A department of The University of California-San Diego, The Scripps Institution of Oceanography is one of the oldest, largest, and most important centers for ocean, earth and atmospheric science research, education, and public service in the world.
Research at Scripps encompasses physical, chemical, biological, geological, and geophysical studies of the oceans, Earth, and planets. Scripps undergraduate and graduate programs provide transformative educational and research opportunities in ocean, earth, and atmospheric sciences, as well as degrees in climate science and policy and marine biodiversity and conservation.
Scripps Institution of Oceanography was founded in 1903 as the Marine Biological Association of San Diego, an independent biological research laboratory. It was proposed and incorporated by a committee of the San Diego Chamber of Commerce, led by local activist and amateur malacologist Fred Baker, together with two colleagues. He recruited University of California Zoology professor William Emerson Ritter to head up the proposed marine biology institution, and obtained financial support from local philanthropists E. W. Scripps and his sister Ellen Browning Scripps. They fully funded the institution for its first decade. It began institutional life in the boathouse of the Hotel del Coronado located on San Diego Bay. It re-located in 1905 to the La Jolla area on the head above La Jolla Cove, and finally in 1907 to its present location.
In 1912 Scripps became incorporated into The University of California and was renamed the “Scripps Institution for Biological Research.” Since 1916, measurements have been taken daily at its pier. The name was changed to Scripps Institution of Oceanography in October 1925. During the 1960s, led by Scripps Institution of Oceanography director Roger Revelle, it formed the nucleus for the creation of The University of California-San Diego on a bluff overlooking Scripps Institution.
The Old Scripps Building, designed by Irving Gill, was declared a National Historic Landmark in 1982. Architect Barton Myers designed the current Scripps Building for the Institution of Oceanography in 1998.
Research programs
The institution’s research programs encompass biological, physical, chemical, geological, and geophysical studies of the oceans and land. Scripps also studies the interaction of the oceans with both the atmospheric climate and environmental concerns on terra firma. Related to this research, Scripps offers undergraduate and graduate degrees.
Today, the Scripps staff of 1,300 includes approximately 235 faculty, 180 other scientists and some 350 graduate students, with an annual budget of more than $281 million. The institution operates a fleet of four oceanographic research vessels.
The Integrated Research Themes encompassing the work done by Scripps researchers are Biodiversity and Conservation, California Environment, Earth and Planetary Chemistry, Earth Through Space and Time, Energy and the Environment, Environment and Human Health, Global Change, Global Environmental Monitoring, Hazards, Ice and Climate, Instruments and Innovation, Interfaces, Marine Life, Modeling Theory and Computing, Sound and Light and the Sea, and Waves and Circulation.
Organizational structure
Scripps Oceanography is divided into three research sections, each with its own subdivisions:
• Biology
• Earth
• Oceans & Atmosphere
The University of California-San Diego is a public land-grant research university in San Diego, California. Established in 1960 near the pre-existing Scripps Institution of Oceanography, The University of California-San Diego is the southernmost of the ten campuses of the University of California, and offers over 200 undergraduate and graduate degree programs, enrolling 33,343 undergraduate and 9,533 graduate students. The University of California-San Diego occupies 2,178 acres (881 ha) near the coast of the Pacific Ocean, with the main campus resting on approximately 1,152 acres (466 ha). The University of California-San Diego is ranked among the best universities in the world by major college and university rankings.
The University of California-San Diego consists of twelve undergraduate, graduate and professional schools as well as seven undergraduate residential colleges. It received over 140,000 applications for undergraduate admissions in Fall 2021, making it the second most applied-to university in the United States. The University of California-San Diego San Diego Health, the region’s only academic health system, provides patient care, conducts medical research and educates future health care professionals at The University of California-San Diego Medical Center, Hillcrest, Jacobs Medical Center, Moores Cancer Center, Sulpizio Cardiovascular Center, Shiley Eye Institute, Institute for Genomic Medicine, Koman Family Outpatient Pavilion and various express care and urgent care clinics throughout San Diego.
The University of California-San Diego operates 19 organized research units as well as eight School of Medicine research units, six research centers at Scripps Institution of Oceanography and two multi-campus initiatives. The University of California-San Diego is also closely affiliated with several regional research centers, such as The Salk Institute, the Sanford Burnham Prebys Medical Discovery Institute, the Sanford Consortium for Regenerative Medicine, and The Scripps Research Institute. It is classified among “R1: Doctoral Universities – Very high research activity”. According to The National Science Foundation, The University of California-San Diego spent $1.354 billion on research and development in fiscal year 2019, ranking it 6th in the nation.
The University of California-San Diego is considered one of the country’s “Public Ivies”. The University of California-San Diego faculty, researchers, and alumni have won 27 Nobel Prizes as well as three Fields Medals, eight National Medals of Science, eight MacArthur Fellowships, and three Pulitzer Prizes. Additionally, of the current faculty, 29 have been elected to The National Academy of Engineering, 70 to The National Academy of Sciences, 45 to the Institute of Medicine and 110 to The American Academy of Arts and Sciences.
History
When the Regents of the University of California originally authorized The University of California-San Diego campus in 1956, it was planned to be a graduate and research institution, providing instruction in the sciences, mathematics, and engineering. Local citizens supported the idea, voting the same year to transfer to the university 59 acres (24 ha) of mesa land on the coast near the preexisting Scripps Institution of Oceanography. The Regents requested an additional gift of 550 acres (220 ha) of undeveloped mesa land northeast of Scripps, as well as 500 acres (200 ha) on the former site of Camp Matthews from the federal government, but Roger Revelle, then director of Scripps Institution and main advocate for establishing the new campus, jeopardized the site selection by exposing the La Jolla community’s exclusive real estate business practices, which were antagonistic to minority racial and religious groups. This outraged local conservatives, as well as Regent Edwin W. Pauley.
University of California President Clark Kerr satisfied San Diego city donors by changing the proposed name from University of California, La Jolla, to University of California-San Diego. The city voted in agreement to its part in 1958, and the University of California approved construction of the new campus in 1960. Because of the clash with Pauley, Revelle was not made chancellor. Herbert York, first director of The DOE’s Lawrence Livermore National Laboratory, was designated instead. York planned the main campus according to the “Oxbridge” model, relying on many of Revelle’s ideas.
According to Kerr, “San Diego always asked for the best,” though this created much friction throughout the University of California system, including with Kerr himself, because The University of California-San Diego often seemed to be “asking for too much and too fast.” Kerr attributed The University of California-San Diego’s “special personality” to Scripps, which for over five decades had been the most isolated University of California unit in every sense: geographically, financially, and institutionally. It was a great shock to the Scripps community to learn that Scripps was now expected to become the nucleus of a new University of California campus and would now be the object of far more attention from both the university administration in Berkeley and the state government in Sacramento.
The University of California-San Diego was the first general campus of the University of California to be designed “from the top down” in terms of research emphasis. Local leaders disagreed on whether the new school should be a technical research institute or a more broadly based school that included undergraduates as well. John Jay Hopkins of General Dynamics Corporation pledged one million dollars for the former while the City Council offered free land for the latter. The original authorization for The University of California-San Diego campus given by the University of California Regents in 1956 approved a “graduate program in science and technology” that included undergraduate programs, a compromise that won both the support of General Dynamics and the city voters’ approval.
Nobel laureate Harold Urey, a physicist from the University of Chicago, and Hans Suess, who had published the first paper on the greenhouse effect with Revelle in the previous year, were early recruits to the faculty in 1958. Maria Goeppert-Mayer, later the second female Nobel laureate in physics, was appointed professor of physics in 1960. The graduate division of the school opened in 1960 with 20 faculty in residence, with instruction offered in the fields of physics, biology, chemistry, and earth science. Before the main campus completed construction, classes were held in the Scripps Institution of Oceanography.
By 1963, new facilities on the mesa had been finished for the School of Science and Engineering, and new buildings were under construction for Social Sciences and Humanities. Ten additional faculty in those disciplines were hired, and the whole site was designated the First College, later renamed after Roger Revelle, of the new campus. York resigned as chancellor that year and was replaced by John Semple Galbraith. The undergraduate program accepted its first class of 181 freshman at Revelle College in 1964. Second College was founded in 1964, on the land deeded by the federal government, and named after environmentalist John Muir two years later. The University of California-San Diego School of Medicine also accepted its first students in 1966.
Political theorist Herbert Marcuse joined the faculty in 1965. A champion of the New Left, he reportedly was the first protester to occupy the administration building in a demonstration organized by his student, political activist Angela Davis. The American Legion offered to buy out the remainder of Marcuse’s contract for $20,000; the Regents censured Chancellor William J. McGill for defending Marcuse on the basis of academic freedom, but further action was averted after local leaders expressed support for Marcuse. Further student unrest was felt at the university, as the United States increased its involvement in the Vietnam War during the mid-1960s, when a student raised a Viet Minh flag over the campus. Protests escalated as the war continued and were only exacerbated after the National Guard fired on student protesters at Kent State University in 1970. Over 200 students occupied Urey Hall, with one student setting himself on fire in protest of the war.
Early research activity and faculty quality, notably in the sciences, was integral to shaping the focus and culture of the university. Even before The University of California-San Diego had its own campus, faculty recruits had already made significant research breakthroughs, such as the Keeling Curve, a graph that plots rapidly increasing carbon dioxide levels in the atmosphere and was the first significant evidence for global climate change; the Kohn–Sham equations, used to investigate particular atoms and molecules in quantum chemistry; and the Miller–Urey experiment, which gave birth to the field of prebiotic chemistry.
Engineering, particularly computer science, became an important part of the university’s academics as it matured. University researchers helped develop The University of California-San Diego Pascal, an early machine-independent programming language that later heavily influenced Java; the National Science Foundation Network, a precursor to the Internet; and the Network News Transfer Protocol during the late 1970s to 1980s. In economics, the methods for analyzing economic time series with time-varying volatility (ARCH), and with common trends (co-integration) were developed. The University of California-San Diego maintained its research intense character after its founding, racking up 25 Nobel Laureates affiliated within 50 years of history; a rate of five per decade.
Under Richard C. Atkinson’s leadership as chancellor from 1980 to 1995, The University of California-San Diego strengthened its ties with the city of San Diego by encouraging technology transfer with developing companies, transforming San Diego into a world leader in technology-based industries. He oversaw a rapid expansion of the School of Engineering, later renamed after Qualcomm founder Irwin M. Jacobs, with the construction of the San Diego Supercomputer Center and establishment of the computer science, electrical engineering, and bioengineering departments. Private donations increased from $15 million to nearly $50 million annually, faculty expanded by nearly 50%, and enrollment doubled to about 18,000 students during his administration. By the end of his chancellorship, the quality of The University of California-San Diego graduate programs was ranked 10th in the nation by The National Research Council.
The University of California-San Diego continued to undergo further expansion during the first decade of the new millennium with the establishment and construction of two new professional schools — the Skaggs School of Pharmacy and Rady School of Management—and the California Institute for Telecommunications and Information Technology, a research institute run jointly with University of California-Irvine. The University of California-San Diego also reached two financial milestones during this time, becoming the first university in the western region to raise over $1 billion in its eight-year fundraising campaign in 2007 and also obtaining an additional $1 billion through research contracts and grants in a single fiscal year for the first time in 2010. Despite this, due to the California budget crisis, the university loaned $40 million against its own assets in 2009 to offset a significant reduction in state educational appropriations. The salary of Pradeep Khosla, who became chancellor in 2012, has been the subject of controversy amidst continued budget cuts and tuition increases.
On November 27, 2017, The University of California-San Diego announced it would leave its longtime athletic home of the California Collegiate Athletic Association, an NCAA Division II league, to begin a transition to Division I in 2020. At that time, it would join the Big West Conference, already home to four other UC campuses (Davis, Irvine, Riverside, Santa Barbara). The transition period would run through the 2023–24 school year. The university prepared to transition to NCAA Division I competition on July 1, 2020.
Research
Applied Physics and Mathematics
The Nature Index lists The University of California-San Diego as 6th in the United States for research output by article count in 2019. In 2017, The University of California-San Diego spent $1.13 billion on research, the 7th highest expenditure among academic institutions in the U.S. The university operates several organized research units, including the Center for Astrophysics and Space Sciences (CASS), the Center for Drug Discovery Innovation, and the Institute for Neural Computation. The University of California-San Diego also maintains close ties to the nearby Scripps Research Institute and Salk Institute for Biological Studies. In 1977, The University of California-San Diego developed and released the University of California-San Diego Pascal programming language. The university was designated as one of the original national Alzheimer’s disease research centers in 1984 by the National Institute on Aging. In 2018, The University of California-San Diego received $10.5 million from The DOE’s National Nuclear Security Administration to establish the Center for Matters under Extreme Pressure (CMEC).
The University of California-San Diego founded The San Diego Supercomputer Center in 1985, which provides high performance computing for research in various scientific disciplines. In 2000, The University of California-San Diego partnered with The University of California-Irvine to create the Qualcomm Institute, which integrates research in photonics, nanotechnology, and wireless telecommunication to develop solutions to problems in energy, health, and the environment.
The University of California-San Diego also operates the Scripps Institution of Oceanography, one of the largest centers of research in earth science in the world, which predates the university itself. Together, SDSC and SIO, along with funding partner universities California Institute of Technology, San Diego State University, and The University of California-Santa Barbara, manage the High Performance Wireless Research and Education Network.
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