From University of South Florida : “$44 Million NIH Grant to See if Dementia Can Be Prevented”

From University of South Florida

April 06, 2021

National Institutes of Health (US)

Researchers at the University South Florida in Tampa have received a $44.4 million grant from the National Institutes of Health (NIH)(US) for the Preventing Alzheimer’s with Cognitive Training (PACT) Study.This new grant furthers prior research [PubMed], published as findings of the ACTIVE Study in 2017, that showed a small amount of cognitive training significantly reduced the risk and incidence of dementia among older adults. The computerized brain training used in the prior study and the new study is found exclusively in the BrainHQ app, made by Posit Science, and is based on the science of brain plasticity – how the brain rewires itself through learning.

The PACT Study is a very large randomized controlled trial, which plans to enroll 7,600 adults, aged 65 and older, to test the effectiveness of BrainHQ computerized brain exercises in reducing the incidence of medical diagnoses of Mild Cognitive Impairment (MCI) and dementia.

A feasibility stage of the study with over 1,000 participants has been completed and the new grant-to be overseen by the National Institute on Aging-will be deployed to bring the study to scale with a completion target date in 2027.

PACT participants will be randomized into two training groups. Each group will be asked to complete a total of 25 hours over the course of up to five months, and then an additional 10 hours after one year and two years.

“This study addresses the central question that most people have about brain training – does training your brain reduce your chances of dementia?” said Dr. Henry Mahncke, CEO of Posit Science, the maker of BrainHQ.

The ACTIVE study provided the possible beginnings of an answer in 2017. Those results grabbed headlines worldwide, since it was the first large randomized controlled trial to show an intervention (of any kind) could be effective in reducing dementia risk and incidence. Researchers reported an up to 48 percent reduction in dementia incidence among people who asked to complete up to 18 hours of training and an overall 29 percent reduction in dementia risk.

A 2020 study in Australia also found a statistically and clinically significant reduction in Alzheimer’s risk from an intervention that combined advice on Alzheimer’s risk reduction with using BrainHQ over an eight-week period, a meeting with a dietician to set up a diet plan, and a meeting with a physiologist to set up a physical exercise plan, when compared to a control group just getting advice on lifestyle risk redaction, brain exercise, diet, and physical exercise.

Some eighteen studies have been published on the impact of using BrainHQ among people with MCI or similar pre-dementia conditions, who are typically considered at elevated risk for Alzheimer’s or other dementias. Results from those studies have included improved performance on standard measures of cognitive abilities, better performance on standard measures of mood, better performance at tasks necessary to maintain independent living, better connectivity in key cortical networks, and improvement in the autonomic nervous system (as measured by heart rate variability).

“It’s gratifying to see the NIH going the distance – building on the established science of brain training to answer the crucial question of dementia prevention,” Dr. Mahncke observed. “Billions have been spent in the thus far unsuccessful search for drugs to prevent MCI and dementia, and so it’s great to see a serious commitment to evaluating the plasticity-based training that has delivered so many promising results in recent studies. It’s impressive that USF is leading this study – they have a strong history of performing large-scale clinical trials required to advance basic science into clinical practice.”

More than 100 published studies of the exercises in BrainHQ have shown benefits, including gains in standard measures of cognition (attention, speed, memory, executive function), in standard measures of quality of life (mood, confidence and control, managing stress, health-related quality of life) and in real world activities (gait, balance, driving, everyday cognition, maintaining independence, healthcare costs). BrainHQ is now offered, without charge, as a benefit by leading national and 5-star Medicare Advantage plans and by hundreds of clinics, libraries, and communities. Consumers can also try BrainHQ for free at http://www.brainhq.com.

See the full article here.

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Please help promote STEM in your local schools.

Stem Education Coalition

Welcome to the University of South Florida, a Preeminent State Research University! Located in the heart of Tampa Bay, the University of South Florida is dedicated to empowering students to maximize their potential for lifelong success.

USF is situated in the vibrant and diverse Tampa Bay region, with campuses in Tampa, St. Petersburg and Sarasota-Manatee. Together these campuses serve more than 50,000 students and offer undergraduate, graduate, specialist and doctoral degrees.

Across our 14 colleges, undergraduates choose from over 180 majors and concentrations, from business and engineering to the arts and USF Health. We are dedicated to empowering our students to prosper and have been recognized nationally for closing the achievement gap regardless of race, background or socioeconomic status.

Over the past five years, USF has been the fastest-rising university in the nation, public or private, on the U.S. News and World Report’s list of best universities. USF ranks as the 46th best public university in America.

From University of Toronto (CA): “Gene that affects iron metabolism linked to improved performance in athletes U of T study finds”

From University of Toronto(CA)

March 24, 2021
Jim Oldfield

Researchers studied 100 athletes from a variety of sports and found that athletes genetically at risk for iron overload but with iron stores below potentially toxic levels could have a competitive edge. Credit: South Agency via Getty Images)

A genetic variation that regulates iron metabolism may enhance athletes’ endurance performance, researchers at the University of Toronto have found.

The findings could help explain studies that show an association between the genetic variation and elite athletes across many sports, and may help competitive athletes fine-tune their iron intake to boost performance.

The variation, found in the homeostatic iron regulator (HFE) gene, is a known cause of iron overload – a condition called hemochromatosis in which the body absorbs too much iron leading to organ and joint damage.

Athletes at risk for hemochromatosis but with iron stores below potentially toxic levels could have a competitive edge. Yet, most athletes are unsure if boosting their intake of iron from supplements or diet is likely to be beneficial or harmful.

“Increasing iron intake might not be ideal for athletes who already have the elevated risk genotype, but athletes with the low-risk genotypes could potentially benefit from increasing their iron stores,” said Ahmed El-Sohemy, a professor of nutritional sciences in U of T’s Temerty Faculty of Medicine.

“Genetic testing and supervision by a health-care professional to monitor iron status could be an effective way for athletes to optimize endurance performance.”

The researchers’ findings were recently published online in Medicine & Science in Sport & Exercise and will appear in the journal’s July 2021 print issue. The study is the first to look at the association between HFE genotype and endurance performance in competitive male athletes.

El-Sohemy and his colleagues studied 100 athletes from a variety of sports, tracking how quickly they cycled 10 kilometers while measuring their aerobic capacity through VO2 peak, a measure of oxygen used during exercise.

The researchers found that those genetically at risk for iron overload performed eight per cent better than those with a low risk, cycling 1.3 minutes faster on average. They also showed that athletes with higher risk for iron overload had a 17 per cent greater oxygen carrying capacity, which could explain why they cycled faster.

The higher-risk group was small (11 males), but the findings are consistent with studies on iron in endurance performance, which show that iron facilitates oxygen transport and that athletes with levels on the higher end of normal can circulate oxygen in their muscles more efficiently.

Athletes with the elevated genetic risk variation may be less likely to feel fatigued and more likely to recover quicker after high-intensity exercise, El-Sohemy said.

Nanci Guest is a post-doctoral researcher at U of T and sport dietitian who conducted the trial. She said she hopes the study raises awareness about the importance of genetics in optimizing nutritional status among athletes, trainers and their coaches.

“Despite our vigilance toward addressing low-iron status, these findings suggest that we may need to direct our attention to achieving optimal iron status by aiming toward mid- or higher ends of normal,” Guest said.

El-Sohemy and his colleagues are now looking at whether iron status is associated with other measures of athletic performance such as power and strength. They plan to examine whether HFE and additional genes could be important, and they hope to broaden the work further to include females and recreational athletes.

Drishti Thakkar is a graduate student in the Faculty of Information at U of T who analyzed the trial data and compiled the results as part of an undergraduate project in nutritional sciences. “I’m excited to see more athletes consider genetic testing to obtain precise information for more personalized nutrition and training regimens,” said Thakkar. “I think this is definitely part of the future in sports nutrition.”

The research was supported by the Canadian Institutes of Health Research, Canadian Foundation for Dietetic Research, Nutrigenomix, the Coca Cola Company and Mitacs. El-Sohemy is the founder and chief science officer of Nutrigenomix and Guest is on the company’s scientific advisory board. Nutrigenomix provides genetic testing for personalized nutrition including the HFE gene and iron metabolism.

See the full article here .

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Please help promote STEM in your local schools.

Stem Education Coalition

The University of Toronto(CA) is a public research university in Toronto, Ontario, Canada, located on the grounds that surround Queen’s Park. It was founded by royal charter in 1827 as King’s College, the oldest university in the province of Ontario.

Originally controlled by the Church of England, the university assumed its present name in 1850 upon becoming a secular institution.

As a collegiate university, it comprises eleven colleges each with substantial autonomy on financial and institutional affairs and significant differences in character and history. The university also operates two satellite campuses located in Scarborough and Mississauga.

University of Toronto has evolved into Canada’s leading institution of learning, discovery and knowledge creation. We are proud to be one of the world’s top research-intensive universities, driven to invent and innovate.

Our students have the opportunity to learn from and work with preeminent thought leaders through our multidisciplinary network of teaching and research faculty, alumni and partners.

The ideas, innovations and actions of more than 560,000 graduates continue to have a positive impact on the world.

Academically, the University of Toronto is noted for movements and curricula in literary criticism and communication theory, known collectively as the Toronto School.

The university was the birthplace of insulin and stem cell research, and was the site of the first electron microscope in North America; the identification of the first black hole Cygnus X-1; multi-touch technology, and the development of the theory of NP-completeness.

The university was one of several universities involved in early research of deep learning. It receives the most annual scientific research funding of any Canadian university and is one of two members of the Association of American Universities (US) outside the United States, the other being McGill(CA).

The Varsity Blues are the athletic teams that represent the university in intercollegiate league matches, with ties to gridiron football, rowing and ice hockey. The earliest recorded instance of gridiron football occurred at University of Toronto’s University College in November 1861.

The university’s Hart House is an early example of the North American student centre, simultaneously serving cultural, intellectual, and recreational interests within its large Gothic-revival complex.

The University of Toronto has educated three Governors General of Canada, four Prime Ministers of Canada, three foreign leaders, and fourteen Justices of the Supreme Court. As of March 2019, ten Nobel laureates, five Turing Award winners, 94 Rhodes Scholars, and one Fields Medalist have been affiliated with the university.

Early history

The founding of a colonial college had long been the desire of John Graves Simcoe, the first Lieutenant-Governor of Upper Canada and founder of York, the colonial capital. As an University of Oxford (UK)-educated military commander who had fought in the American Revolutionary War, Simcoe believed a college was needed to counter the spread of republicanism from the United States. The Upper Canada Executive Committee recommended in 1798 that a college be established in York.

On March 15, 1827, a royal charter was formally issued by King George IV, proclaiming “from this time one College, with the style and privileges of a University … for the education of youth in the principles of the Christian Religion, and for their instruction in the various branches of Science and Literature … to continue for ever, to be called King’s College.” The granting of the charter was largely the result of intense lobbying by John Strachan, the influential Anglican Bishop of Toronto who took office as the college’s first president. The original three-storey Greek Revival school building was built on the present site of Queen’s Park.

Under Strachan’s stewardship, King’s College was a religious institution closely aligned with the Church of England and the British colonial elite, known as the Family Compact. Reformist politicians opposed the clergy’s control over colonial institutions and fought to have the college secularized. In 1849, after a lengthy and heated debate, the newly elected responsible government of the Province of Canada voted to rename King’s College as the University of Toronto and severed the school’s ties with the church. Having anticipated this decision, the enraged Strachan had resigned a year earlier to open Trinity College as a private Anglican seminary. University College was created as the nondenominational teaching branch of the University of Toronto. During the American Civil War the threat of Union blockade on British North America prompted the creation of the University Rifle Corps which saw battle in resisting the Fenian raids on the Niagara border in 1866. The Corps was part of the Reserve Militia lead by Professor Henry Croft.

Established in 1878, the School of Practical Science was the precursor to the Faculty of Applied Science and Engineering which has been nicknamed Skule since its earliest days. While the Faculty of Medicine opened in 1843 medical teaching was conducted by proprietary schools from 1853 until 1887 when the faculty absorbed the Toronto School of Medicine. Meanwhile the university continued to set examinations and confer medical degrees. The university opened the Faculty of Law in 1887, followed by the Faculty of Dentistry in 1888 when the Royal College of Dental Surgeons became an affiliate. Women were first admitted to the university in 1884.

A devastating fire in 1890 gutted the interior of University College and destroyed 33,000 volumes from the library but the university restored the building and replenished its library within two years. Over the next two decades a collegiate system took shape as the university arranged federation with several ecclesiastical colleges including Strachan’s Trinity College in 1904. The university operated the Royal Conservatory of Music from 1896 to 1991 and the Royal Ontario Museum from 1912 to 1968; both still retain close ties with the university as independent institutions. The University of Toronto Press was founded in 1901 as Canada’s first academic publishing house. The Faculty of Forestry founded in 1907 with Bernhard Fernow as dean was Canada’s first university faculty devoted to forest science. In 1910, the Faculty of Education opened its laboratory school, the University of Toronto Schools.

World wars and post-war years

The First and Second World Wars curtailed some university activities as undergraduate and graduate men eagerly enlisted. Intercollegiate athletic competitions and the Hart House Debates were suspended although exhibition and interfaculty games were still held. The David Dunlap Observatory in Richmond Hill opened in 1935 followed by the University of Toronto Institute for Aerospace Studies in 1949. The university opened satellite campuses in Scarborough in 1964 and in Mississauga in 1967. The university’s former affiliated schools at the Ontario Agricultural College and Glendon Hall became fully independent of the University of Toronto and became part of University of Guelph (CA) in 1964 and York University (CA) in 1965 respectively. Beginning in the 1980s reductions in government funding prompted more rigorous fundraising efforts.

Since 2000

In 2000 Kin-Yip Chun was reinstated as a professor of the university after he launched an unsuccessful lawsuit against the university alleging racial discrimination. In 2017 a human rights application was filed against the University by one of its students for allegedly delaying the investigation of sexual assault and being dismissive of their concerns. In 2018 the university cleared one of its professors of allegations of discrimination and antisemitism in an internal investigation after a complaint was filed by one of its students.

The University of Toronto was the first Canadian university to amass a financial endowment greater than c. $1 billion in 2007. On September 24, 2020 the university announced a $250 million gift to the Faculty of Medicine from businessman and philanthropist James C. Temerty- the largest single philanthropic donation in Canadian history. This broke the previous record for the school set in 2019 when Gerry Schwartz and Heather Reisman jointly donated $100 million for the creation of a 750,000-square foot innovation and artificial intelligence centre.

Research

Since 1926 the University of Toronto has been a member of the Association of American Universities (US) a consortium of the leading North American research universities. The university manages by far the largest annual research budget of any university in Canada with sponsored direct-cost expenditures of $878 million in 2010. In 2018 the University of Toronto was named the top research university in Canada by Research Infosource with a sponsored research income (external sources of funding) of $1,147.584 million in 2017. In the same year the university’s faculty averaged a sponsored research income of $428,200 while graduate students averaged a sponsored research income of $63,700. The federal government was the largest source of funding with grants from the Canadian Institutes of Health Research; the Natural Sciences and Engineering Research Council; and the Social Sciences and Humanities Research Council amounting to about one-third of the research budget. About eight percent of research funding came from corporations- mostly in the healthcare industry.

The first practical electron microscope was built by the physics department in 1938. During World War II the university developed the G-suit- a life-saving garment worn by Allied fighter plane pilots later adopted for use by astronauts.Development of the infrared chemiluminescence technique improved analyses of energy behaviours in chemical reactions. In 1963 the asteroid 2104 Toronto was discovered in the David Dunlap Observatory in Richmond Hill and is named after the university. In 1972 studies on Cygnus X-1 led to the publication of the first observational evidence proving the existence of black holes. Toronto astronomers have also discovered the Uranian moons of Caliban and Sycorax; the dwarf galaxies of Andromeda I, II and III; and the supernova SN 1987A. A pioneer in computing technology the university designed and built UTEC- one of the world’s first operational computers- and later purchased Ferut- the second commercial computer after UNIVAC I. Multi-touch technology was developed at Toronto with applications ranging from handheld devices to collaboration walls. The AeroVelo Atlas which won the Igor I. Sikorsky Human Powered Helicopter Competition in 2013 was developed by the university’s team of students and graduates and was tested in Vaughan.

The discovery of insulin at the University of Toronto in 1921 is considered among the most significant events in the history of medicine. The stem cell was discovered at the university in 1963 forming the basis for bone marrow transplantation and all subsequent research on adult and embryonic stem cells. This was the first of many findings at Toronto relating to stem cells including the identification of pancreatic and retinal stem cells. The cancer stem cell was first identified in 1997 by Toronto researchers who have since found stem cell associations in leukemia; brain tumors; and colorectal cancer. Medical inventions developed at Toronto include the glycaemic index; the infant cereal Pablum; the use of protective hypothermia in open heart surgery; and the first artificial cardiac pacemaker. The first successful single-lung transplant was performed at Toronto in 1981 followed by the first nerve transplant in 1988; and the first double-lung transplant in 1989. Researchers identified the maturation promoting factor that regulates cell division and discovered the T-cell receptor which triggers responses of the immune system. The university is credited with isolating the genes that cause Fanconi anemia; cystic fibrosis; and early-onset Alzheimer’s disease among numerous other diseases. Between 1914 and 1972 the university operated the Connaught Medical Research Laboratories- now part of the pharmaceutical corporation Sanofi-Aventis. Among the research conducted at the laboratory was the development of gel electrophoresis.

The University of Toronto is the primary research presence that supports one of the world’s largest concentrations of biotechnology firms. More than 5,000 principal investigators reside within 2 kilometres (1.2 mi) from the university grounds in Toronto’s Discovery District conducting $1 billion of medical research annually. MaRS Discovery District is a research park that serves commercial enterprises and the university’s technology transfer ventures. In 2008, the university disclosed 159 inventions and had 114 active start-up companies. Its SciNet Consortium operates the most powerful supercomputer in Canada.

From Penn Today: “A tool for more inclusive autism screening”

From Penn Today

March 16, 2021

Screening tools for autism spectrum disorder (ASD) often fail to identify ASD among children from low-income families and racial/ethnic minority groups, particularly when English is not the family’s primary language. A new visually-based tool may reduce these disparities at a pivotal point in children’s development.

In Pediatrics, Zuleyha Cidav, David Mandell, and colleagues found that the Developmental Check-In Tool (DCI) can accurately identify ASD risk among young children from families that have low income or speak English as a second language.

Most of the sample was Hispanic, enrolled in Medicaid or uninsured, and from families where English was not the primary language. The DCI is written in both English and Spanish, and it includes 26 pictures in four domains: communication, play, social, and behavior. Each picture includes a brief description.

Consistent with an earlier study [NIH], the DCI showed a good ability to distinguish between children with ASD and children without ASD, performing well across all age groups, genders, levels of maternal education, primary language, and racial/ethnic groups included in the study.

The DCI can improve ASD identification among children from families with low literacy or limited English proficiency. Even though ASD can be diagnosed in children as young as 18 months, on average, children in the U.S. receive an ASD diagnosis at age four. Earlier recognition of ASD is critical for early intervention and improved functional outcomes. While the disparity in ASD diagnoses between Black and white children has improved over time, Hispanic children continue to be diagnosed at a lower rate. The DCI could lead to earlier and more accurate ASD diagnoses for this group.

See the full article here .

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Please help promote STEM in your local schools.

Stem Education Coalition

Academic life at Penn is unparalleled, with 100 countries and every U.S. state represented in one of the Ivy League’s most diverse student bodies. Consistently ranked among the top 10 universities in the country, Penn enrolls 10,000 undergraduate students and welcomes an additional 10,000 students to our world-renowned graduate and professional schools.

Penn’s award-winning educators and scholars encourage students to pursue inquiry and discovery, follow their passions, and address the world’s most challenging problems through an interdisciplinary approach.

The University of Pennsylvania(US) is a private Ivy League research university in Philadelphia, Pennsylvania. The university claims a founding date of 1740 and is one of the nine colonial colleges chartered prior to the U.S. Declaration of Independence. Benjamin Franklin, Penn’s founder and first president, advocated an educational program that trained leaders in commerce, government, and public service, similar to a modern liberal arts curriculum.

Penn has four undergraduate schools as well as twelve graduate and professional schools. Schools enrolling undergraduates include the College of Arts and Sciences; the School of Engineering and Applied Science; the Wharton School; and the School of Nursing. Penn’s “One University Policy” allows students to enroll in classes in any of Penn’s twelve schools. Among its highly ranked graduate and professional schools are a law school whose first professor wrote the first draft of the United States Constitution, the first school of medicine in North America (Perelman School of Medicine, 1765), and the first collegiate business school (Wharton School, 1881).

Penn is also home to the first “student union” building and organization (Houston Hall, 1896), the first Catholic student club in North America (Newman Center, 1893), the first double-decker college football stadium (Franklin Field, 1924 when second deck was constructed), and Morris Arboretum, the official arboretum of the Commonwealth of Pennsylvania. The first general-purpose electronic computer (ENIAC) was developed at Penn and formally dedicated in 1946. In 2019, the university had an endowment of $14.65 billion, the sixth-largest endowment of all universities in the United States, as well as a research budget of $1.02 billion. The university’s athletics program, the Quakers, fields varsity teams in 33 sports as a member of the NCAA Division I Ivy League conference.

As of 2018, distinguished alumni and/or Trustees include three U.S. Supreme Court justices; 32 U.S. senators; 46 U.S. governors; 163 members of the U.S. House of Representatives; eight signers of the Declaration of Independence and seven signers of the U.S. Constitution (four of whom signed both representing two-thirds of the six people who signed both); 24 members of the Continental Congress; 14 foreign heads of state and two presidents of the United States, including Donald Trump. As of October 2019, 36 Nobel laureates; 80 members of the American Academy of Arts and Sciences(US); 64 billionaires; 29 Rhodes Scholars; 15 Marshall Scholars and 16 Pulitzer Prize winners have been affiliated with the university.

History

The University of Pennsylvania considers itself the fourth-oldest institution of higher education in the United States, though this is contested by Princeton University(US) and Columbia(US) Universities. The university also considers itself as the first university in the United States with both undergraduate and graduate studies.

In 1740, a group of Philadelphians joined together to erect a great preaching hall for the traveling evangelist George Whitefield, who toured the American colonies delivering open-air sermons. The building was designed and built by Edmund Woolley and was the largest building in the city at the time, drawing thousands of people the first time it was preached in. It was initially planned to serve as a charity school as well, but a lack of funds forced plans for the chapel and school to be suspended. According to Franklin’s autobiography, it was in 1743 when he first had the idea to establish an academy, “thinking the Rev. Richard Peters a fit person to superintend such an institution”. However, Peters declined a casual inquiry from Franklin and nothing further was done for another six years. In the fall of 1749, now more eager to create a school to educate future generations, Benjamin Franklin circulated a pamphlet titled Proposals Relating to the Education of Youth in Pensilvania, his vision for what he called a “Public Academy of Philadelphia”. Unlike the other colonial colleges that existed in 1749—Harvard University(US), William & Mary(US), Yale Unversity(US), and The College of New Jersey(US)—Franklin’s new school would not focus merely on education for the clergy. He advocated an innovative concept of higher education, one which would teach both the ornamental knowledge of the arts and the practical skills necessary for making a living and doing public service. The proposed program of study could have become the nation’s first modern liberal arts curriculum, although it was never implemented because Anglican priest William Smith (1727-1803), who became the first provost, and other trustees strongly preferred the traditional curriculum.

Franklin assembled a board of trustees from among the leading citizens of Philadelphia, the first such non-sectarian board in America. At the first meeting of the 24 members of the board of trustees on November 13, 1749, the issue of where to locate the school was a prime concern. Although a lot across Sixth Street from the old Pennsylvania State House (later renamed and famously known since 1776 as “Independence Hall”), was offered without cost by James Logan, its owner, the trustees realized that the building erected in 1740, which was still vacant, would be an even better site. The original sponsors of the dormant building still owed considerable construction debts and asked Franklin’s group to assume their debts and, accordingly, their inactive trusts. On February 1, 1750, the new board took over the building and trusts of the old board. On August 13, 1751, the “Academy of Philadelphia”, using the great hall at 4th and Arch Streets, took in its first secondary students. A charity school also was chartered on July 13, 1753 by the intentions of the original “New Building” donors, although it lasted only a few years. On June 16, 1755, the “College of Philadelphia” was chartered, paving the way for the addition of undergraduate instruction. All three schools shared the same board of trustees and were considered to be part of the same institution. The first commencement exercises were held on May 17, 1757.

The institution of higher learning was known as the College of Philadelphia from 1755 to 1779. In 1779, not trusting then-provost the Reverend William Smith’s “Loyalist” tendencies, the revolutionary State Legislature created a University of the State of Pennsylvania. The result was a schism, with Smith continuing to operate an attenuated version of the College of Philadelphia. In 1791, the legislature issued a new charter, merging the two institutions into a new University of Pennsylvania with twelve men from each institution on the new board of trustees.

Penn has three claims to being the first university in the United States, according to university archives director Mark Frazier Lloyd: the 1765 founding of the first medical school in America made Penn the first institution to offer both “undergraduate” and professional education; the 1779 charter made it the first American institution of higher learning to take the name of “University”; and existing colleges were established as seminaries (although, as detailed earlier, Penn adopted a traditional seminary curriculum as well).

After being located in downtown Philadelphia for more than a century, the campus was moved across the Schuylkill River to property purchased from the Blockley Almshouse in West Philadelphia in 1872, where it has since remained in an area now known as University City. Although Penn began operating as an academy or secondary school in 1751 and obtained its collegiate charter in 1755, it initially designated 1750 as its founding date; this is the year that appears on the first iteration of the university seal. Sometime later in its early history, Penn began to consider 1749 as its founding date and this year was referenced for over a century, including at the centennial celebration in 1849. In 1899, the board of trustees voted to adjust the founding date earlier again, this time to 1740, the date of “the creation of the earliest of the many educational trusts the University has taken upon itself”. The board of trustees voted in response to a three-year campaign by Penn’s General Alumni Society to retroactively revise the university’s founding date to appear older than Princeton University, which had been chartered in 1746.

Research, innovations and discoveries

Penn is classified as an “R1” doctoral university: “Highest research activity.” Its economic impact on the Commonwealth of Pennsylvania for 2015 amounted to $14.3 billion. Penn’s research expenditures in the 2018 fiscal year were $1.442 billion, the fourth largest in the U.S. In fiscal year 2019 Penn received $582.3 million in funding from the National Institutes of Health(US).

In line with its well-known interdisciplinary tradition, Penn’s research centers often span two or more disciplines. In the 2010–2011 academic year alone, five interdisciplinary research centers were created or substantially expanded; these include the Center for Health-care Financing; the Center for Global Women’s Health at the Nursing School; the $13 million Morris Arboretum’s Horticulture Center; the $15 million Jay H. Baker Retailing Center at Wharton; and the $13 million Translational Research Center at Penn Medicine. With these additions, Penn now counts 165 research centers hosting a research community of over 4,300 faculty and over 1,100 postdoctoral fellows, 5,500 academic support staff and graduate student trainees. To further assist the advancement of interdisciplinary research President Amy Gutmann established the “Penn Integrates Knowledge” title awarded to selected Penn professors “whose research and teaching exemplify the integration of knowledge”. These professors hold endowed professorships and joint appointments between Penn’s schools.

Penn is also among the most prolific producers of doctoral students. With 487 PhDs awarded in 2009, Penn ranks third in the Ivy League, only behind Columbia University(US) and Cornell University(US) (Harvard University(US) did not report data). It also has one of the highest numbers of post-doctoral appointees (933 in number for 2004–2007), ranking third in the Ivy League (behind Harvard and Yale University(US)) and tenth nationally.

In most disciplines Penn professors’ productivity is among the highest in the nation and first in the fields of epidemiology, business, communication studies, comparative literature, languages, information science, criminal justice and criminology, social sciences and sociology. According to the National Research Council nearly three-quarters of Penn’s 41 assessed programs were placed in ranges including the top 10 rankings in their fields, with more than half of these in ranges including the top five rankings in these fields.

Penn’s research tradition has historically been complemented by innovations that shaped higher education. In addition to establishing the first medical school; the first university teaching hospital; the first business school; and the first student union Penn was also the cradle of other significant developments. In 1852, Penn Law was the first law school in the nation to publish a law journal still in existence (then called The American Law Register, now the Penn Law Review, one of the most cited law journals in the world). Under the deanship of William Draper Lewis, the law school was also one of the first schools to emphasize legal teaching by full-time professors instead of practitioners, a system that is still followed today. The Wharton School was home to several pioneering developments in business education. It established the first research center in a business school in 1921 and the first center for entrepreneurship center in 1973 and it regularly introduced novel curricula for which BusinessWeek wrote, “Wharton is on the crest of a wave of reinvention and change in management education”.

Several major scientific discoveries have also taken place at Penn. The university is probably best known as the place where the first general-purpose electronic computer (ENIAC) was born in 1946 at the Moore School of Electrical Engineering. It was here also where the world’s first spelling and grammar checkers were created, as well as the popular COBOL programming language. Penn can also boast some of the most important discoveries in the field of medicine. The dialysis machine used as an artificial replacement for lost kidney function was conceived and devised out of a pressure cooker by William Inouye while he was still a student at Penn Med; the Rubella and Hepatitis B vaccines were developed at Penn; the discovery of cancer’s link with genes; cognitive therapy; Retin-A (the cream used to treat acne), Resistin; the Philadelphia gene (linked to chronic myelogenous leukemia) and the technology behind PET Scans were all discovered by Penn Med researchers. More recent gene research has led to the discovery of the genes for fragile X syndrome, the most common form of inherited mental retardation; spinal and bulbar muscular atrophy, a disorder marked by progressive muscle wasting; and Charcot–Marie–Tooth disease, a progressive neurodegenerative disease that affects the hands, feet and limbs.

Conductive polymer was also developed at Penn by Alan J. Heeger, Alan MacDiarmid and Hideki Shirakawa, an invention that earned them the Nobel Prize in Chemistry. On faculty since 1965, Ralph L. Brinster developed the scientific basis for in vitro fertilization and the transgenic mouse at Penn and was awarded the National Medal of Science in 2010. The theory of superconductivity was also partly developed at Penn, by then-faculty member John Robert Schrieffer (along with John Bardeen and Leon Cooper). The university has also contributed major advancements in the fields of economics and management. Among the many discoveries are conjoint analysis, widely used as a predictive tool especially in market research; Simon Kuznets’s method of measuring Gross National Product; the Penn effect (the observation that consumer price levels in richer countries are systematically higher than in poorer ones) and the “Wharton Model” developed by Nobel-laureate Lawrence Klein to measure and forecast economic activity. The idea behind Health Maintenance Organizations also belonged to Penn professor Robert Eilers, who put it into practice during then-President Nixon’s health reform in the 1970s.

International partnerships

Students can study abroad for a semester or a year at partner institutions such as the London School of Economics(UK), University of Barcelona [Universitat de Barcelona](ES), Paris Institute of Political Studies [Institut d’études politiques de Paris](FR), University of Queensland(AU), University College London(UK), King’s College London(UK), Hebrew University of Jerusalem(IL) and University of Warwick(UK).

From ETH Zürich[Eidgenössische Technische Hochschule Zürich)](CH): “Cells as computers”

From ETH Zürich[Eidgenössische Technische Hochschule Zürich)](CH)

09.03.2021
Fabio Bergamin

Scientists at ETH Zürich are working to develop information-​processing switching systems in biological cells. Now, for the first time, they have developed an OR switch in human cells that reacts to different signals.

In their research, ETH Zürich scientists bring mathematical and electronic information processing approaches into biological systems. Credit: Colourbox / Montage: Gidon Wessner.

Biological cells might one day be equipped with artificial genetic programs that work in much the same way as electronic systems. Such reprogrammed cells could perform medical tasks in our bodies, such as diagnosing diseases or providing treatment. One potential application would be altered immune cells that combat tumour cells. Since tumour cells have different genetic characteristics, the following biochemical program, for example, would have to run in the therapeutic cells: “Destroy a cell if it is type X or Y or Z”.

In mathematics and electronics such a function is called an OR gate. “These are needed in decision-​making processes whenever multiple different things lead to the same outcome, when you have to deal with alternative inputs at the same time”, explains Jiten Doshi, a doctoral student in ETH Professor Yaakov Benenson’s group in the Department of Biosystems Science and Engineering at ETH Zürich in Basel. In collaboration with colleagues, Doshi and Benenson have for the first time developed an OR gate – a molecular switching element that emits a biochemical output signal when it measures one of two or more biochemical input signals – in human cells.

Previous OR gates implemented in biological cells were quite simple, as Benenson explains. When, for example, a cell was supposed to secrete a substance in response to signal X or signal Y, scientists combined two systems: one that secreted the substance in response to signal X and another that released the substance in response to signal Y. The ETH scientists’ new OR gate, in contrast, is a true OR gate – one comprising a single system. As with all biological systems, its design takes the form of a DNA sequence. In the case of the new gate, this sequence is significantly shorter because it is one system rather than two separate ones.

Inspired by nature

To realise the OR gate the ETH researchers used transcription-the cellular process in which a gene’s information is read and stored in the form of a messenger RNA molecule. This process is initiated by a class of molecules known as transcription factors, which bind in a specific manner to an “activation sequence” (promoter) of a gene. There are also genes with several such activation sequences. One example of this is a gene called CIITA, which has four such sequences in humans.

The ETH researchers turned to this gene for inspiration and developed synthetic constructs with a gene that is responsible for the production of a fluorescent dye and that has three activation sequences. Up to two transcription factors, and one or more small RNA molecules specifically bind to and control each of these sequences. The gene construct produces the dye when transcription is initiated via at least one of the three activation sequences – i.e., via sequence 1 or sequence 2 or sequence 3. The researchers filed a patent application for this new system.

Closing a loop

As Benenson stresses, this research closes a loop. From a historical standpoint, information processing has developed in living creatures over the course of evolution: humans and animals are very good at taking in sensory input with their brains, processing it and responding accordingly. Only in the 19th century did the development of switchable electronic components began: first with the relay; later with vacuum tubes; and finally with transistors, which enabled the construction of modern computers.

In their research, the ETH bioengineers try to bring these mathematical and electronic information processing approaches back into biological systems. “For one thing, this helps us to better understand biology, such as how biochemical decision-​making processes take place in cells. For another, we can use these approaches to develop new biological functions,” Benenson says. The researchers benefit from the fact that biological cells offer ideal conditions for this.

More complex forms of diagnostics and treatment

This cellular information processing is expected to be used primarily in medical diagnostics and treatment. “Today’s medical treatments are usually rather simple: we often treat diseases with just a single drug, regardless of how complex the biology and the causes of diseases may be,” Benenson says. This stands in contrast to how an organism deals with external changes. The body’s stress reactions, for example, can be very complex.

“Our biomolecular information processing approach holds out the promise of using artificial genetic networks that can identify and process different signals to one day develop complex cellular diagnostics systems and potentially more effective forms of treatment,” Benenson says. Such forms of treatment would also identify when a normal state has been reached following successful treatment. For example, an ideal cancer treatment fights tumour cells as long as they are present in the body, but does not fight healthy tissue, because doing so would cause damage.

Science paper:
Multiple Alternative Promoters and Alternative Splicing Enable Universal Transcription-Based Logic Computation in Mammalian Cells
CELL

See the full article here .

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Please help promote STEM in your local schools.

Stem Education Coalition

ETH Zürich [Eidgenössische Technische Hochschule Zürich] (CH) is a public research university in the city of Zürich, Switzerland. Founded by the Swiss Federal Government in 1854 with the stated mission to educate engineers and scientists, the school focuses exclusively on science, technology, engineering and mathematics. Like its sister institution EPFL[École polytechnique fédérale de Lausanne](CH), it is part of the Swiss Federal Institutes of Technology Domain (ETH Domain), part of the Swiss Federal Department of Economic Affairs, Education and Research.

The university is an attractive destination for international students thanks to low tuition fees of 809 CHF per semester, PhD and graduate salaries that are amongst the world’s highest, and a world-class reputation in academia and industry. There are currently 22,200 students from over 120 countries, of which 4,180 are pursuing doctoral degrees. In the 2021 edition of the QS World University Rankings ETH Zürich is ranked 6th in the world and 8th by the Times Higher Education World Rankings 2020. In the 2020 QS World University Rankings by subject it is ranked 4th in the world for engineering and technology (2nd in Europe) and 1st for earth & marine science.

As of November 2019, 21 Nobel laureates, 2 Fields Medalists, 2 Pritzker Prize winners, and 1 Turing Award winner have been affiliated with the Institute, including Albert Einstein. Other notable alumni include John von Neumann and Santiago Calatrava. It is a founding member of the IDEA League and the International Alliance of Research Universities (IARU) and a member of the CESAER network.

ETH Zürich was founded on 7 February 1854 by the Swiss Confederation and began giving its first lectures on 16 October 1855 as a polytechnic institute (eidgenössische polytechnische Schule) at various sites throughout the city of Zurich. It was initially composed of six faculties: architecture, civil engineering, mechanical engineering, chemistry, forestry, and an integrated department for the fields of mathematics, natural sciences, literature, and social and political sciences.

It is locally still known as Polytechnikum, or simply as Poly, derived from the original name eidgenössische polytechnische Schule, which translates to “federal polytechnic school”.

ETH Zürich is a federal institute (i.e., under direct administration by the Swiss government), whereas the University of Zürich is a cantonal institution. The decision for a new federal university was heavily disputed at the time; the liberals pressed for a “federal university”, while the conservative forces wanted all universities to remain under cantonal control, worried that the liberals would gain more political power than they already had. In the beginning, both universities were co-located in the buildings of the University of Zürich.

From 1905 to 1908, under the presidency of Jérôme Franel, the course program of ETH Zürich was restructured to that of a real university and ETH Zürich was granted the right to award doctorates. In 1909 the first doctorates were awarded. In 1911, it was given its current name, Eidgenössische Technische Hochschule. In 1924, another reorganization structured the university in 12 departments. However, it now has 16 departments.

ETH Zürich, EPFL (Swiss Federal Institute of Technology in Lausanne) [École polytechnique fédérale de Lausanne](CH), and four associated research institutes form the “ETH Domain” with the aim of collaborating on scientific projects.

Reputation and ranking

ETH Zürich is ranked among the top universities in the world. Typically, popular rankings place the institution as the best university in continental Europe and ETH Zürich is consistently ranked among the top 1-5 universities in Europe, and among the top 3-10 best universities of the world.

Historically, ETH Zürich has achieved its reputation particularly in the fields of chemistry, mathematics and physics. There are 32 Nobel laureates who are associated with ETH Zürich, the most recent of whom is Richard F. Heck, awarded the Nobel Prize in chemistry in 2010. Albert Einstein is perhaps its most famous alumnus.

In 2018, the QS World University Rankings placed ETH Zürich at 7th overall in the world. In 2015, ETH Zürich was ranked 5th in the world in Engineering, Science and Technology, just behind the Massachusetts Institute of Technology(US), Stanford University(US) and University of Cambridge(UK). In 2015, ETH Zürich also ranked 6th in the world in Natural Sciences, and in 2016 ranked 1st in the world for Earth & Marine Sciences for the second consecutive year.

In 2016, Times Higher Education WorldUniversity Rankings ranked ETH Zürich 9th overall in the world and 8th in the world in the field of Engineering & Technology, just behind the Massachusetts Institute of Technology(US), Stanford University(US), California Institute of Technology(US), Princeton University(US), University of Cambridge(UK), Imperial College London(UK) and

From MIT: “Chemists boost boron’s utility”

From MIT News

March 2, 2021
Anne Trafton

MIT chemists have created a new boron-containing chemical group that is 10,000 times more stable than boron on its own.
Credits: MIT News.

Boron, a metalloid element that sits next to carbon in the periodic table, has many traits that make it potentially useful as a drug component. Nonetheless, only five FDA-approved drugs contain boron largely because molecules that contain boron are unstable in the presence of molecular oxygen.

MIT chemists have now designed a boron-containing chemical group that is 10,000 times more stable than its predecessors. This could make it possible to incorporate boron into drugs and potentially improve the drugs’ ability to bind their targets, the researchers say.

“It’s an entity that medicinal chemists can add to compounds they’re interested in, to provide desirable attributes that no other molecule will have,” says Ron Raines, the Firmenich Professor of Chemistry at MIT and the senior author of the new study.

To demonstrate the potential of this approach, Raines and his colleagues showed that they could improve the protein-binding strength of a drug that is used to treat diseases caused by the misfolding of a protein called transthyretin.

MIT graduate student Brian Graham and former graduate student Ian Windsor are the lead author of the study, which appears this week in the PNAS. Former MIT postdoc Brian Gold is also an author of the paper.

Hungry for electrons

Boron is most commonly found in the Earth’s crust in the form of minerals such as borax. It contains one fewer electron than carbon and is hungry for additional electrons. When boron is incorporated into a potential drug compound, that hunger for electrons often leads it to interact with an oxygen molecule (O2) or another reactive form of oxygen, which can destroy the compound.

The boron-containing drug bortezomib, which prevents cells from being able to break down used proteins, is an effective cancer chemotherapy agent. However, the drug is unstable and is destroyed readily by oxygen.

Previous research has shown that the stability of boron-containing compounds can be increased by appending benzene- a six-carbon ring. In 2018, Raines and his colleagues used this approach to create a modified version of a drug called darunavir, a protease inhibitor used to treat HIV/AIDS. They found that this molecule bound to HIV protease much more tightly than the original version of darunavir. However, later studies revealed that the molecule still did not survive for long under physiological conditions.

In the new paper, the researchers decided to use a chemical group called a carboxylate to further anchor boron within a molecule. An oxygen atom in the carboxylate forms a strong covalent bond — a type of bond that involves sharing pairs of electrons between atoms — with boron.

“That covalent bond pacifies the boron,” Raines says. “The boron can no longer react with an oxygen molecule in the way that boron in other contexts can, and it still retains its desirable properties.”

One of those desirable properties is the ability to form reversible covalent bonds with the target of the drug. This reversibility could prevent drugs from permanently locking onto incorrect targets, Raines says. Another useful feature is that the boron-containing group — also known as benzoxaboralone — forms many weaker bonds called hydrogen bonds with other molecules, which helps to ensure a tight fit once the right target is located.

Greater stability

Once they showed that benzoxaboralone was significantly more stable than boron in other contexts, the researchers used it to create a molecule that can bind to transthyretin. This protein, which carries hormones through the bloodstream, can cause amyloid diseases when it misfolds and clumps. Drugs that bind to transthyretin can stabilize it and prevent it from clumping. The research team showed that adding benzoxaboralone to an existing drug helped it to bind strongly with transthyretin.

Benzoxaboralone may offer medicinal chemists a useful tool that they can explore in many different types of drugs that bind to proteins or sugar molecules, Raines says. His lab is now working on a new version of darunavir that incorporates benzoxaboralone. They recently developed a way to synthesize this compound and are now in the process of measuring how strongly it binds to HIV protease.

“We are working hard on this because we think that this scaffold will provide much greater stability and utility than any other presentation of boron in a biological context,” Raines says.

MIT has filed for a patent on the use of benzoxaboralone in medicinal chemistry and other areas. The research was funded by the National Institutes of Health and the National Science Foundation.

See the full article here .

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Please help promote STEM in your local schools.

Stem Education Coalition

Massachusetts Institute of Technology (MIT) is a private land-grant research university in Cambridge, Massachusetts. The institute has an urban campus that extends more than a mile (1.6 km) alongside the Charles River. The institute also encompasses a number of major off-campus facilities such as the MIT Lincoln Laboratory, the Bates Center, and the Haystack Observatory, as well as affiliated laboratories such as the Broad and Whitehead Institutes.

MIT Haystack Observatory, Westford, Massachusetts, USA, Altitude 131 m (430 ft).

Founded in 1861 in response to the increasing industrialization of the United States, MIT adopted a European polytechnic university model and stressed laboratory instruction in applied science and engineering. It has since played a key role in the development of many aspects of modern science, engineering, mathematics, and technology, and is widely known for its innovation and academic strength. It is frequently regarded as one of the most prestigious universities in the world.

As of December 2020, 97 Nobel laureates, 26 Turing Award winners, and 8 Fields Medalists have been affiliated with MIT as alumni, faculty members, or researchers. In addition, 58 National Medal of Science recipients, 29 National Medals of Technology and Innovation recipients, 50 MacArthur Fellows, 80 Marshall Scholars, 3 Mitchell Scholars, 22 Schwarzman Scholars, 41 astronauts, and 16 Chief Scientists of the U.S. Air Force have been affiliated with MIT. The university also has a strong entrepreneurial culture and MIT alumni have founded or co-founded many notable companies. MIT is a member of the Association of American Universities (AAU).

Foundation and vision

In 1859, a proposal was submitted to the Massachusetts General Court to use newly filled lands in Back Bay, Boston for a “Conservatory of Art and Science”, but the proposal failed. A charter for the incorporation of the Massachusetts Institute of Technology, proposed by William Barton Rogers, was signed by John Albion Andrew, the governor of Massachusetts, on April 10, 1861.

Rogers, a professor from the University of Virginia, wanted to establish an institution to address rapid scientific and technological advances. He did not wish to found a professional school, but a combination with elements of both professional and liberal education, proposing that:

The true and only practicable object of a polytechnic school is, as I conceive, the teaching, not of the minute details and manipulations of the arts, which can be done only in the workshop, but the inculcation of those scientific principles which form the basis and explanation of them, and along with this, a full and methodical review of all their leading processes and operations in connection with physical laws.

The Rogers Plan reflected the German research university model, emphasizing an independent faculty engaged in research, as well as instruction oriented around seminars and laboratories.

Early developments

Two days after MIT was chartered, the first battle of the Civil War broke out. After a long delay through the war years, MIT’s first classes were held in the Mercantile Building in Boston in 1865. The new institute was founded as part of the Morrill Land-Grant Colleges Act to fund institutions “to promote the liberal and practical education of the industrial classes” and was a land-grant school. In 1863 under the same act, the Commonwealth of Massachusetts founded the Massachusetts Agricultural College, which developed as the University of Massachusetts Amherst. In 1866, the proceeds from land sales went toward new buildings in the Back Bay.

MIT was informally called “Boston Tech”. The institute adopted the European polytechnic university model and emphasized laboratory instruction from an early date. Despite chronic financial problems, the institute saw growth in the last two decades of the 19th century under President Francis Amasa Walker. Programs in electrical, chemical, marine, and sanitary engineering were introduced, new buildings were built, and the size of the student body increased to more than one thousand.

The curriculum drifted to a vocational emphasis, with less focus on theoretical science. The fledgling school still suffered from chronic financial shortages which diverted the attention of the MIT leadership. During these “Boston Tech” years, MIT faculty and alumni rebuffed Harvard University president (and former MIT faculty) Charles W. Eliot’s repeated attempts to merge MIT with Harvard College’s Lawrence Scientific School. There would be at least six attempts to absorb MIT into Harvard. In its cramped Back Bay location, MIT could not afford to expand its overcrowded facilities, driving a desperate search for a new campus and funding. Eventually, the MIT Corporation approved a formal agreement to merge with Harvard, over the vehement objections of MIT faculty, students, and alumni. However, a 1917 decision by the Massachusetts Supreme Judicial Court effectively put an end to the merger scheme.

In 1916, the MIT administration and the MIT charter crossed the Charles River on the ceremonial barge Bucentaur built for the occasion, to signify MIT’s move to a spacious new campus largely consisting of filled land on a one-mile-long (1.6 km) tract along the Cambridge side of the Charles River. The neoclassical “New Technology” campus was designed by William W. Bosworth and had been funded largely by anonymous donations from a mysterious “Mr. Smith”, starting in 1912. In January 1920, the donor was revealed to be the industrialist George Eastman of Rochester, New York, who had invented methods of film production and processing, and founded Eastman Kodak. Between 1912 and 1920, Eastman donated $20 million ($236.6 million in 2015 dollars) in cash and Kodak stock to MIT.
Curricular reforms

In the 1930s, President Karl Taylor Compton and Vice-President (effectively Provost) Vannevar Bush emphasized the importance of pure sciences like physics and chemistry and reduced the vocational practice required in shops and drafting studios. The Compton reforms “renewed confidence in the ability of the Institute to develop leadership in science as well as in engineering”. Unlike Ivy League schools, MIT catered more to middle-class families, and depended more on tuition than on endowments or grants for its funding. The school was elected to the Association of American Universities in 1934.

Still, as late as 1949, the Lewis Committee lamented in its report on the state of education at MIT that “the Institute is widely conceived as basically a vocational school”, a “partly unjustified” perception the committee sought to change. The report comprehensively reviewed the undergraduate curriculum, recommended offering a broader education, and warned against letting engineering and government-sponsored research detract from the sciences and humanities. The School of Humanities, Arts, and Social Sciences and the MIT Sloan School of Management were formed in 1950 to compete with the powerful Schools of Science and Engineering. Previously marginalized faculties in the areas of economics, management, political science, and linguistics emerged into cohesive and assertive departments by attracting respected professors and launching competitive graduate programs. The School of Humanities, Arts, and Social Sciences continued to develop under the successive terms of the more humanistically oriented presidents Howard W. Johnson and Jerome Wiesner between 1966 and 1980.

MIT’s involvement in military science surged during World War II. In 1941, Vannevar Bush was appointed head of the federal Office of Scientific Research and Development and directed funding to only a select group of universities, including MIT. Engineers and scientists from across the country gathered at MIT’s Radiation Laboratory, established in 1940 to assist the British military in developing microwave radar. The work done there significantly affected both the war and subsequent research in the area. Other defense projects included gyroscope-based and other complex control systems for gunsight, bombsight, and inertial navigation under Charles Stark Draper’s Instrumentation Laboratory; the development of a digital computer for flight simulations under Project Whirlwind; and high-speed and high-altitude photography under Harold Edgerton. By the end of the war, MIT became the nation’s largest wartime R&D contractor (attracting some criticism of Bush), employing nearly 4000 in the Radiation Laboratory alone and receiving in excess of $100 million ($1.2 billion in 2015 dollars) before 1946. Work on defense projects continued even after then. Post-war government-sponsored research at MIT included SAGE and guidance systems for ballistic missiles and Project Apollo.

These activities affected MIT profoundly. A 1949 report noted the lack of “any great slackening in the pace of life at the Institute” to match the return to peacetime, remembering the “academic tranquility of the prewar years”, though acknowledging the significant contributions of military research to the increased emphasis on graduate education and rapid growth of personnel and facilities. The faculty doubled and the graduate student body quintupled during the terms of Karl Taylor Compton, president of MIT between 1930 and 1948; James Rhyne Killian, president from 1948 to 1957; and Julius Adams Stratton, chancellor from 1952 to 1957, whose institution-building strategies shaped the expanding university. By the 1950s, MIT no longer simply benefited the industries with which it had worked for three decades, and it had developed closer working relationships with new patrons, philanthropic foundations and the federal government.

In late 1960s and early 1970s, student and faculty activists protested against the Vietnam War and MIT’s defense research. In this period MIT’s various departments were researching helicopters, smart bombs and counterinsurgency techniques for the war in Vietnam as well as guidance systems for nuclear missiles. The Union of Concerned Scientists was founded on March 4, 1969 during a meeting of faculty members and students seeking to shift the emphasis on military research toward environmental and social problems. MIT ultimately divested itself from the Instrumentation Laboratory and moved all classified research off-campus to the MIT Lincoln Laboratory facility in 1973 in response to the protests. The student body, faculty, and administration remained comparatively unpolarized during what was a tumultuous time for many other universities. Johnson was seen to be highly successful in leading his institution to “greater strength and unity” after these times of turmoil. However six MIT students were sentenced to prison terms at this time and some former student leaders, such as Michael Albert and George Katsiaficas, are still indignant about MIT’s role in military research and its suppression of these protests. (Richard Leacock’s film, November Actions, records some of these tumultuous events.)

In the 1980s, there was more controversy at MIT over its involvement in SDI (space weaponry) and CBW (chemical and biological warfare) research. More recently, MIT’s research for the military has included work on robots, drones and ‘battle suits’.

Recent history

MIT has kept pace with and helped to advance the digital age. In addition to developing the predecessors to modern computing and networking technologies, students, staff, and faculty members at Project MAC, the Artificial Intelligence Laboratory, and the Tech Model Railroad Club wrote some of the earliest interactive computer video games like Spacewar! and created much of modern hacker slang and culture. Several major computer-related organizations have originated at MIT since the 1980s: Richard Stallman’s GNU Project and the subsequent Free Software Foundation were founded in the mid-1980s at the AI Lab; the MIT Media Lab was founded in 1985 by Nicholas Negroponte and Jerome Wiesner to promote research into novel uses of computer technology; the World Wide Web Consortium standards organization was founded at the Laboratory for Computer Science in 1994 by Tim Berners-Lee; the OpenCourseWare project has made course materials for over 2,000 MIT classes available online free of charge since 2002; and the One Laptop per Child initiative to expand computer education and connectivity to children worldwide was launched in 2005.

MIT was named a sea-grant college in 1976 to support its programs in oceanography and marine sciences and was named a space-grant college in 1989 to support its aeronautics and astronautics programs. Despite diminishing government financial support over the past quarter century, MIT launched several successful development campaigns to significantly expand the campus: new dormitories and athletics buildings on west campus; the Tang Center for Management Education; several buildings in the northeast corner of campus supporting research into biology, brain and cognitive sciences, genomics, biotechnology, and cancer research; and a number of new “backlot” buildings on Vassar Street including the Stata Center. Construction on campus in the 2000s included expansions of the Media Lab, the Sloan School’s eastern campus, and graduate residences in the northwest. In 2006, President Hockfield launched the MIT Energy Research Council to investigate the interdisciplinary challenges posed by increasing global energy consumption.

In 2001, inspired by the open source and open access movements, MIT launched OpenCourseWare to make the lecture notes, problem sets, syllabi, exams, and lectures from the great majority of its courses available online for no charge, though without any formal accreditation for coursework completed. While the cost of supporting and hosting the project is high, OCW expanded in 2005 to include other universities as a part of the OpenCourseWare Consortium, which currently includes more than 250 academic institutions with content available in at least six languages. In 2011, MIT announced it would offer formal certification (but not credits or degrees) to online participants completing coursework in its “MITx” program, for a modest fee. The “edX” online platform supporting MITx was initially developed in partnership with Harvard and its analogous “Harvardx” initiative. The courseware platform is open source, and other universities have already joined and added their own course content. In March 2009 the MIT faculty adopted an open-access policy to make its scholarship publicly accessible online.

MIT has its own police force. Three days after the Boston Marathon bombing of April 2013, MIT Police patrol officer Sean Collier was fatally shot by the suspects Dzhokhar and Tamerlan Tsarnaev, setting off a violent manhunt that shut down the campus and much of the Boston metropolitan area for a day. One week later, Collier’s memorial service was attended by more than 10,000 people, in a ceremony hosted by the MIT community with thousands of police officers from the New England region and Canada. On November 25, 2013, MIT announced the creation of the Collier Medal, to be awarded annually to “an individual or group that embodies the character and qualities that Officer Collier exhibited as a member of the MIT community and in all aspects of his life”. The announcement further stated that “Future recipients of the award will include those whose contributions exceed the boundaries of their profession, those who have contributed to building bridges across the community, and those who consistently and selflessly perform acts of kindness”.

In September 2017, the school announced the creation of an artificial intelligence research lab called the MIT-IBM Watson AI Lab. IBM will spend $240 million over the next decade, and the lab will be staffed by MIT and IBM scientists. In October 2018 MIT announced that it would open a new Schwarzman College of Computing dedicated to the study of artificial intelligence, named after lead donor and The Blackstone Group CEO Stephen Schwarzman. The focus of the new college is to study not just AI, but interdisciplinary AI education, and how AI can be used in fields as diverse as history and biology. The cost of buildings and new faculty for the new college is expected to be $1 billion upon completion.

The Laser Interferometer Gravitational-Wave Observatory (LIGO) was designed and constructed by a team of scientists from California Institute of Technology, MIT, and industrial contractors, and funded by the National Science Foundation.

MIT/Caltech Advanced aLigo .

It was designed to open the field of gravitational-wave astronomy through the detection of gravitational waves predicted by general relativity. Gravitational waves were detected for the first time by the LIGO detector in 2015. For contributions to the LIGO detector and the observation of gravitational waves, two Caltech physicists, Kip Thorne and Barry Barish, and MIT physicist Rainer Weiss won the Nobel Prize in physics in 2017. Weiss, who is also an MIT graduate, designed the laser interferometric technique, which served as the essential blueprint for the LIGO.

The mission of MIT is to advance knowledge and educate students in science, technology, and other areas of scholarship that will best serve the nation and the world in the twenty-first century. We seek to develop in each member of the MIT community the ability and passion to work wisely, creatively, and effectively for the betterment of humankind.

USPS “Forever” postage stamps celebrating Innovation at MIT.

From Purdue University(US): “Scientists use Doppler to peer inside cells leading to better faster diagnoses and treatments of infections”

From Purdue University(US)

February 24, 2021

Brittany Steff, writer
765-494-7833
bsteff@purdue.edu

Source:
David Nolte
765-494-3013
nolte@purdue.edu

David Nolte works with the Doppler apparatus to peer inside living cells, giving him insight into intracellular activity, metabolism, and pathogenicity. Credit: Rebecca McElhoe/Purdue University photo.

Doppler radar improves lives by peeking inside air masses to predict the weather. A Purdue University team is using similar technology to look inside living cells, introducing a method to detect pathogens and treat infections in ways that scientists never have before.

In a new study, the team used Doppler to sneak a peek inside cells and track their metabolic activity in real time without having to wait for cultures to grow. Using this ability, the researchers can test microbes found in food, water, and other environments to see if they are pathogens, or help them identify the right medicine to treat antibiotic-resistant bacteria.

David Nolte, Purdue’s Edward M. Purcell Distinguished Professor of Physics and Astronomy; John Turek, professor of basic medical sciences; Eduardo Ximenes, research scientist in the Department of Agricultural and Biological Engineering; and Michael Ladisch, Distinguished Professor of Agricultural and Biological Engineering, adapted this technique from their previous study on cancer cells in a paper released this month in Communications Biology.

The team isolated living immortalized cells in multi-well plates to study them with Doppler. Credit: Rebecca McElhoe/Purdue University.

Using funding from the National Science Foundation as well as Purdue’s Discovery Park Big Idea Challenge, the team worked with immortalized cell lines — cells that will live forever unless you kill them. They exposed the cells to different known pathogens, in this case salmonella and E. coli. They then used the Doppler effect to spy out how the cells reacted. These living cells are called “sentinels” and observing their reactions is called a biodynamic assay.

“First we did biodynamic imaging applied to cancer, and now we’re applying it to other kinds cells,” Nolte said. “This research is unique. No one else is doing anything like it. That’s why it’s so intriguing.”

This strategy is broadly applicable when scientists have isolated an unknown microbe and want to know if it is pathogenic — harmful to living tissues — or not. Such cells may show up in food supply, water sources or even in recently melted glaciers.

“This directly measures whether a cell is pathogenic,” Ladisch said. “If the cells are not pathogenic, the Doppler signal doesn’t change. If they are, the Doppler signal changes quite significantly. Then you can use other methods to identify what the pathogen is. This is a quick way to tell friend from foe.”

Being able to quickly discern whether a cell is harmful is incredibly helpful in situations where people encounter a living unknown microorganism, allowing scientists to know what precautions to take. Once it is known that a microbe is harmful, they can begin established protocols that allow them to determine the specific identity of the cell and determine an effective antibiotic against the microorganism.

Another benefit is the ability to quickly and directly diagnose which bacteria respond to which antibiotics. Antibiotic resistance can be a devastating problem in hospitals and other environments where individuals with already compromised bodies and immune systems may be exposed to and infected by increasingly high amounts of antibiotic resistant bacteria. Sometimes this results in a potentially fatal condition called bacterial sepsis or septicemia. This is different from the viral sepsis that has been discussed in connection with COVID-19, though the scientists say their next steps will include investigating viral sepsis.

Treating sepsis is challenging. Giving the patient broad-spectrum antibiotics, which sounds like a good idea, might not help and could make the situation worse for the next patient. Letting bacteria come into close contact with antibiotics that do not kill them only makes them more resistant to that antibiotic and more difficult to fight next time.

Culturing the patient’s tissues and homing in on the correct antibiotic to use can take time the patient does not have, usually eight to 10 hours. This new biodynamic process allows scientists to put the patient’s bacterial samples in an array of tiny petri dishes containing the tissue sentinels and treat each sample with a different antibiotic. Using Doppler, they can quickly notice which bacterial samples have dramatic metabolic changes. The samples that do are the ones that have reacted to the antibiotic — the bacteria are dying, being defeated and beaten back by antibiotics.

“When we treat with antibiotics, the bacteria don’t have to multiply much before they start to affect the tissue sentinels,” Nolte explained. “There are still too few bacteria to see or to measure directly, but they start to affect how the tissues behaves, which we can detect with Doppler.”

In less than half the time a traditional culture and diagnosis takes, doctors could tell which antibiotic to administer, bolstering the patient’s chances for recovery. The researchers worked closely with the Purdue Research Foundation Office of Technology Commercialization to patent and license their technologies. They plan to further explore whether this method would work for tissue samples exposed to nonliving pathogenic cells or dried spores, and to test for and treat viral sepsis.

See the full article here .

five-ways-keep-your-child-safe-school-shootings

Please help promote STEM in your local schools.

Stem Education Coalition

Purdue University(US) is a public land-grant research university in West Lafayette, Indiana, and the flagship campus of the Purdue University system. The university was founded in 1869 after Lafayette businessman John Purdue donated land and money to establish a college of science, technology, and agriculture in his name. The first classes were held on September 16, 1874, with six instructors and 39 students.

The main campus in West Lafayette offers more than 200 majors for undergraduates, over 69 masters and doctoral programs, and professional degrees in pharmacy and veterinary medicine. In addition, Purdue has 18 intercollegiate sports teams and more than 900 student organizations. Purdue is a member of the Big Ten Conference and enrolls the second largest student body of any university in Indiana, as well as the fourth largest foreign student population of any university in the United States.

Purdue University is a member of the Association of American Universities and is classified among “R1: Doctoral Universities – Very high research activity”. Purdue has 25 American astronauts as alumni and as of April 2019, the university has been associated with 13 Nobel Prizes.

In 1865, the Indiana General Assembly voted to take advantage of the Morrill Land-Grant Colleges Act of 1862 and began plans to establish an institution with a focus on agriculture and engineering. Communities throughout the state offered facilities and funding in bids for the location of the new college. Popular proposals included the addition of an agriculture department at Indiana State University, at what is now Butler University(US). By 1869, Tippecanoe County’s offer included $150,000 (equivalent to $2.9 million in 2019) from Lafayette business leader and philanthropist John Purdue; $50,000 from the county; and 100 acres (0.4 km^2) of land from local residents.

On May 6, 1869, the General Assembly established the institution in Tippecanoe County as Purdue University, in the name of the principal benefactor. Classes began at Purdue on September 16, 1874, with six instructors and 39 students. Professor John S. Hougham was Purdue’s first faculty member and served as acting president between the administrations of presidents Shortridge and White. A campus of five buildings was completed by the end of 1874. In 1875, Sarah A. Oren, the State Librarian of Indiana, was appointed Professor of Botany.

Purdue issued its first degree, a Bachelor of Science in chemistry, in 1875, and admitted its first female students that autumn.

Emerson E. White, the university’s president, from 1876 to 1883, followed a strict interpretation of the Morrill Act. Rather than emulate the classical universities, White believed Purdue should be an “industrial college” and devote its resources toward providing a broad, liberal education with an emphasis on science, technology, and agriculture. He intended not only to prepare students for industrial work, but also to prepare them to be good citizens and family members.

Part of White’s plan to distinguish Purdue from classical universities included a controversial attempt to ban fraternities, which was ultimately overturned by the Indiana Supreme Court, leading to White’s resignation. The next president, James H. Smart, is remembered for his call in 1894 to rebuild the original Heavilon Hall “one brick higher” after it had been destroyed by a fire.

By the end of the nineteenth century, the university was organized into schools of agriculture, engineering (mechanical, civil, and electrical), and pharmacy; former U.S. President Benjamin Harrison served on the board of trustees. Purdue’s engineering laboratories included testing facilities for a locomotive, and for a Corliss steam engine—one of the most efficient engines of the time. The School of Agriculture shared its research with farmers throughout the state, with its cooperative extension services, and would undergo a period of growth over the following two decades. Programs in education and home economics were soon established, as well as a short-lived school of medicine. By 1925, Purdue had the largest undergraduate engineering enrollment in the country, a status it would keep for half a century.

President Edward C. Elliott oversaw a campus building program between the world wars. Inventor, alumnus, and trustee David E. Ross coordinated several fundraisers, donated lands to the university, and was instrumental in establishing the Purdue Research Foundation. Ross’s gifts and fundraisers supported such projects as Ross–Ade Stadium, the Memorial Union, a civil engineering surveying camp, and Purdue University Airport. Purdue Airport was the country’s first university-owned airport and the site of the country’s first college-credit flight training courses.

Amelia Earhart joined the Purdue faculty in 1935 as a consultant for these flight courses and as a counselor on women’s careers. In 1937, the Purdue Research Foundation provided the funds for the Lockheed Electra 10-E Earhart flew on her attempted round-the-world flight.

Every school and department at the university was involved in some type of military research or training during World War II. During a project on radar receivers, Purdue physicists discovered properties of germanium that led to the making of the first transistor. The Army and the Navy conducted training programs at Purdue and more than 17,500 students, staff, and alumni served in the armed forces. Purdue set up about a hundred centers throughout Indiana to train skilled workers for defense industries. As veterans returned to the university under the G.I. Bill, first-year classes were taught at some of these sites to alleviate the demand for campus space. Four of these sites are now degree-granting regional campuses of the Purdue University system. On-campus housing became racially desegregated in 1947, following pressure from Purdue President Frederick L. Hovde and Indiana Governor Ralph F. Gates.

After the war, Hovde worked to expand the academic opportunities at the university. A decade-long construction program emphasized science and research. In the late 1950s and early 1960s the university established programs in veterinary medicine, industrial management, and nursing, as well as the first computer science department in the United States. Undergraduate humanities courses were strengthened, although Hovde only reluctantly approved of graduate-level study in these areas. Purdue awarded its first Bachelor of Arts degrees in 1960. The programs in liberal arts and education, formerly administered by the School of Science, were soon split into an independent school.

The official seal of Purdue was officially inaugurated during the university’s centennial in 1969.

Consisting of elements from emblems that had been used unofficially for 73 years, the current seal depicts a griffin, symbolizing strength, and a three-part shield, representing education, research, and service.

In recent years, Purdue’s leaders have continued to support high-tech research and international programs. In 1987, U.S. President Ronald Reagan visited the West Lafayette campus to give a speech about the influence of technological progress on job creation.

In the 1990s, the university added more opportunities to study abroad and expanded its course offerings in world languages and cultures. The first buildings of the Discovery Park interdisciplinary research center were dedicated in 2004.

Purdue launched a Global Policy Research Institute in 2010 to explore the potential impact of technical knowledge on public policy decisions.

On April 27, 2017, Purdue University announced plans to acquire for-profit college Kaplan University and convert it to a public university in the state of Indiana, subject to multiple levels of approval. That school now operates as Purdue University Global, and aims to serve adult learners.

Campuses

Purdue’s campus is situated in the small city of West Lafayette, near the western bank of the Wabash River, across which sits the larger city of Lafayette. State Street, which is concurrent with State Road 26, divides the northern and southern portions of campus. Academic buildings are mostly concentrated on the eastern and southern parts of campus, with residence halls and intramural fields to the west, and athletic facilities to the north. The Greater Lafayette Public Transportation Corporation (CityBus) operates eight campus loop bus routes on which students, faculty, and staff can ride free of charge with Purdue Identification.

Organization and administration

The university president, appointed by the board of trustees, is the chief administrative officer of the university. The office of the president oversees admission and registration, student conduct and counseling, the administration and scheduling of classes and space, the administration of student athletics and organized extracurricular activities, the libraries, the appointment of the faculty and conditions of their employment, the appointment of all non-faculty employees and the conditions of employment, the general organization of the university, and the planning and administration of the university budget.

The Board of Trustees directly appoints other major officers of the university including a provost who serves as the chief academic officer for the university, several vice presidents with oversight over specific university operations, and the regional campus chancellors.

Academic divisions

Purdue is organized into thirteen major academic divisions.

College of Agriculture

The university’s College of Agriculture supports the university’s agricultural, food, life, and natural resource science programs. The college also supports the university’s charge as a land-grant university to support agriculture throughout the state; its agricultural extension program plays a key role in this.

College of Education

The College of Education offers undergraduate degrees in elementary education, social studies education, and special education, and graduate degrees in these and many other specialty areas of education. It has two departments: (a) Curriculum and Instruction and (b) Educational Studies.

College of Engineering

The Purdue University College of Engineering was established in 1874 with programs in Civil and Mechanical Engineering. The college now offers B.S., M.S., and Ph.D. degrees in more than a dozen disciplines. Purdue’s engineering program has also educated 24 of America’s astronauts, including Neil Armstrong and Eugene Cernan who were the first and last astronauts to have walked on the Moon, respectively. Many of Purdue’s engineering disciplines are recognized as top-ten programs in the U.S. The college as a whole is currently ranked 7th in the U.S. of all doctorate-granting engineering schools by U.S. News & World Report.

Exploratory Studies

The university’s Exploratory Studies program supports undergraduate students who enter the university without having a declared major. It was founded as a pilot program in 1995 and made a permanent program in 1999.

College of Health and Human Sciences

The College of Health and Human Sciences was established in 2010 and is the newest college. It offers B.S., M.S. and Ph.D. degrees in all 10 of its academic units.

College of Liberal Arts

Purdue’s College of Liberal Arts contains the arts, social sciences and humanities programs at the university. Liberal arts courses have been taught at Purdue since its founding in 1874. The School of Science, Education, and Humanities was formed in 1953. In 1963, the School of Humanities, Social Sciences, and Education was established, although Bachelor of Arts degrees had begun to be conferred as early as 1959. In 1989, the School of Liberal Arts was created to encompass Purdue’s arts, humanities, and social sciences programs, while education programs were split off into the newly formed School of Education. The School of Liberal Arts was renamed the College of Liberal Arts in 2005.

Krannert School of Management

The Krannert School of Management offers management courses and programs at the undergraduate, master’s, and doctoral levels.

College of Pharmacy

The university’s College of Pharmacy was established in 1884 and is the 3rd oldest state-funded school of pharmacy in the United States. The school offers two undergraduate programs leading to the B.S. in Pharmaceutical Sciences (BSPS) and the Doctor of Pharmacy (Pharm.D.) professional degree. Graduate programs leading to M.S. and Ph.D. degrees are offered in three departments (Industrial and Physical Pharmacy, Medicinal Chemistry and Molecular Pharmacology, and Pharmacy Practice). Additionally, the school offers several non-degree certificate programs and post-graduate continuing education activities.

Purdue Polytechnic Institute

The Purdue Polytechnic Institute offers bachelor’s, master’s and Ph.D. degrees in a wide range of technology-related disciplines. With over 30,000 living alumni, it is one of the largest technology schools in the United States.

College of Science

The university’s College of Science houses the university’s science departments: Biological Sciences; Chemistry; Computer Science; Earth, Atmospheric, & Planetary Sciences; Mathematics; Physics & Astronomy; and Statistics. The science courses offered by the college account for about one-fourth of Purdue’s one million student credit hours.

College of Veterinary Medicine

The College of Veterinary Medicine is accredited by the AVMA to offer the Doctor of Veterinary Medicine degree, associate’s and bachelor’s degrees in veterinary technology, master’s and Ph.D. degrees, and residency programs leading to specialty board certification. Within the state of Indiana, the Purdue University College of Veterinary Medicine is the only veterinary school, while the Indiana University School of Medicine is one of only two medical schools (the other being Marian University College of Osteopathic Medicine). The two schools frequently collaborate on medical research projects.

Honors College

Purdue’s Honors College supports an honors program for undergraduate students at the university.

The Graduate School

The university’s Graduate School supports graduate students at the university.

Research

The university expended $622.814 million in support of research system-wide in 2017, using funds received from the state and federal governments, industry, foundations, and individual donors. The faculty and more than 400 research laboratories put Purdue University among the leading research institutions. Purdue University is considered by the Carnegie Classification of Institutions of Higher Education to have “very high research activity”. Purdue also was rated the nation’s fourth best place to work in academia, according to rankings released in November 2007 by The Scientist magazine. Purdue’s researchers provide insight, knowledge, assistance, and solutions in many crucial areas. These include, but are not limited to Agriculture; Business and Economy; Education; Engineering; Environment; Healthcare; Individuals, Society, Culture; Manufacturing; Science; Technology; Veterinary Medicine. The Global Trade Analysis Project (GTAP), a global research consortium focused on global economic governance challenges (trade, climate, resource use) is also coordinated by the University. Purdue University generated a record $438 million in sponsored research funding during the 2009–10 fiscal year with participation from National Science Foundation, National Aeronautics and Space Administration, and the U.S. departments of Agriculture, Defense, Energy, and Health and Human Services. Purdue University was ranked fourth in Engineering research expenditures amongst all the colleges in the United States in 2017, with a research expenditure budget of 244.8 million.

Purdue University established the Discovery Park to bring innovation through multidisciplinary action. In all of the eleven centers of Discovery Park, ranging from entrepreneurship to energy and advanced manufacturing, research projects reflect a large economic impact and address global challenges. Purdue University’s nanotechnology research program, built around the new Birck Nanotechnology Center in Discovery Park, ranks among the best in the nation.

The Purdue Research Park which opened in 1961 was developed by Purdue Research Foundation which is a private, nonprofit foundation created to assist Purdue. The park is focused on companies operating in the arenas of life sciences, homeland security, engineering, advanced manufacturing and information technology. It provides an interactive environment for experienced Purdue researchers and for private business and high-tech industry. It currently employs more than 3,000 people in 155 companies, including 90 technology-based firms. The Purdue Research Park was ranked first by the Association of University Research Parks in 2004.

Purdue’s library system consists of fifteen locations throughout the campus, including an archives and special collections research center, an undergraduate library, and several subject-specific libraries. More than three million volumes, including one million electronic books, are held at these locations. The Library houses the Amelia Earhart Collection, a collection of notes and letters belonging to Earhart and her husband George Putnam along with records related to her disappearance and subsequent search efforts. An administrative unit of Purdue University Libraries, Purdue University Press has its roots in the 1960 founding of Purdue University Studies by President Frederick Hovde on a $12,000 grant from the Purdue Research Foundation. This was the result of a committee appointed by President Hovde after the Department of English lamented the lack of publishing venues in the humanities. Since the 1990s, the range of books published by the Press has grown to reflect the work from other colleges at Purdue University especially in the areas of agriculture, health, and engineering. Purdue University Press publishes print and ebook monograph series in a range of subject areas from literary and cultural studies to the study of the human-animal bond. In 1993 Purdue University Press was admitted to membership of the Association of American University Presses. Purdue University Press publishes around 25 books a year and 20 learned journals in print, in print & online, and online-only formats in collaboration with Purdue University Libraries.

Sustainability

Purdue’s Sustainability Council, composed of University administrators and professors, meets monthly to discuss environmental issues and sustainability initiatives at Purdue. The University’s first LEED Certified building was an addition to the Mechanical Engineering Building, which was completed in Fall 2011. The school is also in the process of developing an arboretum on campus. In addition, a system has been set up to display live data detailing current energy production at the campus utility plant. The school holds an annual “Green Week” each fall, an effort to engage the Purdue community with issues relating to environmental sustainability.

Rankings

In its 2021 edition, U.S. News & World Report ranked Purdue University the 5th most innovative national university, tied for the 17th best public university in the United States, tied for 53rd overall, and 114th best globally. U.S. News & World Report also rated Purdue tied for 36th in “Best Undergraduate Teaching, 83rd in “Best Value Schools”, tied for 284th in “Top Performers on Social Mobility”, and the undergraduate engineering program tied for 9th at schools whose highest degree is a doctorate.

From The University of Texas at Dallas: “Study- Reducing Biases About Autism May Increase Social Inclusion”

From The University of Texas at Dallas

Feb. 5, 2021
Stephen Fontenot

Efforts to improve the social success of autistic adolescents and adults have often focused on teaching them ways to think and behave more like their non-autistic peers and to hide the characteristics that define them as autistic. Psychology researchers at The University of Texas at Dallas, however, have been focusing on another approach: promoting understanding and acceptance of autism among non-autistic people.

The researchers published their findings online Jan. 20 in the journal Autism. The study showed that familiarizing non-autistic people with the challenges and strengths of autistic people helped to reduce stigma and misconceptions about autism, but implicit biases about autism were harder to overcome.

Desiree Jones, a psychology doctoral student in the School of Behavioral and Brain Sciences (BBS), is the corresponding author of the paper, and Dr. Noah Sasson, associate professor of psychology, is the senior author.

Autism is characterized by differences in thinking, sensing, and communicating that can make interaction and connection with non-autistic people difficult. Some autistic people are nonspeaking and need a lot of support in their everyday lives, while some are highly verbal and need less support. Jones’ work focuses specifically on the experiences of autistic adults without intellectual disability.

“Previous work in our lab has shown that autistic people are often stereotyped as awkward and less likeable,” Jones said. “Some might think that autistic people don’t want friends or don’t want to interact with people. We want to combat those ideas.”

Promoting autism knowledge among non-autistic adults represents a shift in philosophy about how to improve the social experiences of autistic people. Jones explained that this tactic borrows from research on race and ethnicity.

“Targeting autistic behavior places the burden of social exclusion on autistic people, when we should really be challenging the attitudes that lead others to stigmatize autistic behaviors,” she said. “Research on race suggests that people who have racial biases tend to view that race as a monolith, assigning every member the same features. By exposing them to different people from the group, you can challenge those stereotypes. We believe the same principle applies to autism.”

Testing Biases

The study participants — 238 non-autistic adults — were split into three groups. One group viewed an autism acceptance video originally developed as a PowerPoint presentation by researchers at Simon Fraser University in British Columbia in collaboration with autistic adults. Jones updated it and had narration added. The second group watched a general mental health training presentation that didn’t mention autism, and the third received no training at all. Participants then were tested on their explicit and implicit biases about autism.

“The autism video presents autism facts and promotes acceptance. It gives tips on how to befriend an autistic person and talk to them about their interests,” Jones said. “It also discusses things to avoid, such as sensory overload and pressuring them into engaging.”

Subsequent testing of explicit biases included capturing first impressions of autistic adults in video clips, measuring participants’ autism knowledge and stigma, and gauging their beliefs about autistic functional abilities. Implicit biases also were examined, gauging whether participants unconsciously associate autism with negative personal attributes.

As anticipated, the autism acceptance training group demonstrated greater understanding and acceptance of autism on the explicit measures, including expressing more social interest in autistic adults and resulting in more positive first impressions. However, participants continued to implicitly associate autism with unpleasant personal attributes regardless of which training they experienced.

“Explicit biases are consciously held, evolve quickly and are constrained by social desirability,” Sasson explained. “Implicit biases reflect more durable underlying beliefs — associations reinforced over time that are more resistant to change.”

Many of the stubborn stereotypes about autism are reinforced by portrayals in the media, whether from TV shows like The Good Doctor or movies like Rain Man.

“A common trope exists of the white male autistic person with savant abilities,” Jones said. “They are really smart but very socially awkward. They can be portrayed as flat or without emotion or passion. These beliefs can be harmful and do not reflect how variable these characteristics are among autistic people. They belie the range of unique difficulties and skills that autistic people can have.

“There’s a saying that if you’ve met one autistic person, you’ve met one autistic person. The community varies so much in individual needs, strengths and difficulties that there’s not a very useful prototype. So getting to know actual people and getting away from preconceptions can hopefully help us improve social outcomes for the autistic community.”

What’s Next

Jones said that autistic individuals themselves are integral in plotting the path forward.

“Autistic people often feel that they simply aren’t listened to, that they are dismissed or not cared about,” she said. “A big part of being welcoming is simply acknowledging actual autistic people telling us what they like and what they want research to be. In our lab, we have several autistic master’s and undergraduate students who play a big role in our research, and they’ve taught me a lot.”

Sasson described the results as promising and indicative of the promise of well-done training, although the staying power of such effects remains unclear.

“This half-hour presentation was engaging and entertaining and included a lot of compelling first-person narratives,” he said. “The fact that non-autistic people experiencing the training were more interested in social interaction with autistic people, had fewer misconceptions about autism, and reported more accurate understanding of autistic abilities after completing it is a success story of sorts.

“Whether the effects persist over time is another question. It could very well be that the benefits are transient, which would significantly limit the promise of training programs like this.”

In future work, Jones and Sasson hope to establish a connection between inclusion and acceptance and the mental health and well-being of autistic people, who experience higher levels of depression, anxiety and suicide than the general population.

“It’s not easy to be autistic in a predominantly non-autistic world, and making the social world a bit more accommodating and welcoming to autistic differences could go a long way toward improving personal and professional outcomes for autistic people,” Sasson said.

BBS doctoral student Kilee DeBrabander was the third author of the study, which was funded by a grant from the Texas Higher Education Coordinating Board’s Autism Grant Program.

See the full article here .

five-ways-keep-your-child-safe-school-shootings

Please help promote STEM in your local schools.

Stem Education Coalition

The University of Texas at Dallas is a Carnegie R1 classification (Doctoral Universities – Highest research activity) institution, located in a suburban setting 20 miles north of downtown Dallas. The University enrolls more than 27,600 students — 18,380 undergraduate and 9,250 graduate —and offers a broad array of bachelor’s, master’s, and doctoral degree programs.

Established by Eugene McDermott, J. Erik Jonsson and Cecil Green, the founders of Texas Instruments, UT Dallas is a young institution driven by the entrepreneurial spirit of its founders and their commitment to academic excellence. In 1969, the public research institution joined The University of Texas System and became The University of Texas at Dallas.

A high-energy, nimble, innovative institution, UT Dallas offers top-ranked science, engineering and business programs and has gained prominence for a breadth of educational paths from audiology to arts and technology. UT Dallas’ faculty includes a Nobel laureate, six members of the National Academies and more than 560 tenured and tenure-track professors.

From University of Toronto (CA): “Medicine by Design researchers focus on promoting self-repair of the brain”

From University of Toronto (CA)

January 28, 2021
Julie Crljen

Credit: Jolygon via Getty Images.

If you asked Freda Miller 10 years ago if stem cells could be harnessed to repair brain injuries and disease, she would have said it was too early to tell.

Today, she describes the progress that she and other regenerative medicine experts have made in understanding what regulates populations of stem cells – cells with the potential to turn into many different cell types – and the rapid advances those discoveries have driven.

“Science is like a playground right now,” says Miller, an adjunct scientist in the neurosciences and mental health program at The Hospital for Sick Children (SickKids) and a professor in the department of molecular genetics in the University of Toronto’s Temerty Faculty of Medicine.

“The approaches we’re using allow us to find so much information on things we could only dream of before.”

Miller, who is also a professor at the University of British Columbia, is leading a Medicine by Design-funded team with expertise in computational biology, neurobiology, bioengineering and stem cell biology that is investigating multiple strategies to recruit stem cells to promote self-repair in the brain and in muscle. If it succeeds, the research could improve treatments for diseases such as multiple sclerosis (MS) and cerebral palsy, as well as brain injury.

Miller’s team is one of 11 at U of T and its partner hospitals that are sharing nearly $21 million in funding from Medicine by Design over three years. Funded by a $114-million grant from the Canada First Research Excellence Fund, Medicine by Design is a strategic research initiative that is working at the convergence of engineering, medicine and science to catalyze transformative discoveries in regenerative medicine and accelerate them toward clinical impact.

This is the second round of large-scale, collaborative team projects that Medicine by Design has funded. The support builds on the progress made in the first round of projects (2016-2019) and is spurring further innovation to push regenerative medicine forward. It also led to a 2017 publication – by many of the same researchers on Miller’s current project – in Cell Reports that essentially provided a roadmap for how brain stem cells build the brain developmentally, and then persist to function in the adult brain.

Miller, a neuroscientist, has always been fascinated by the brain and neurons, the network of billions of nerve cells in the brain. Around 15 years ago, when she started to take an interest in the potential regenerative capabilities of stem cells, she began to wonder if she could use stem cells to treat brain injury or disease. Though too little was known about stem cells at the time, she knew that it was a question worth investigating. But she also realized that making and integrating new nerve cells, which are the working parts of brain circuits, would be a daunting task.

“Even if you can convince the stem cells to make more neurons, those neurons then have to survive and they have to integrate into this really complex circuitry,” says Miller. “It just made sense to me that if we’re really going to test this idea of self-repair in the brain, we should go after something that’s more achievable biologically.”

So, Miller turned her attention to a substance called myelin, which covers nerves and allows nerve impulses to travel easily. In many nervous system diseases – MS is a well-known example – and brain injuries, damage to and loss of myelin is a main factor in debilitating symptoms. Thanks in part to the team project award from Medicine by Design, Miller leads a team that has a focus on recruiting stem cells to promote the generation of myelin.

Miller says repairing myelin, also called remyelination, will eventually help to better understand the effects of the target disease or injury, possibly even leading scientists to discover how to reverse it. Boosting myelin is a promising area of research, she adds, because it’s not an all-or-nothing situation.

“Even a little bit of remyelination could have a big impact. You don’t have to win the whole lottery; you don’t have to have 100 per cent remyelination to have a measurable outcome.”

The team’s work is not limited to generating myelin to treat nervous system diseases or brain injury. They are also looking at how they could recruit stem cells to generate more muscle. They are specifically looking at muscular dystrophy, but Miller says the applications from that work can be used in other diseases or situations where damage to muscles has occurred, such as age-related disorders.

Miller’s team includes experts from diverse fields: Gary Bader, a professor at the Donnelly Centre for Cellular and Biomolecular Research and a computational biologist; bioengineers Alison McGuigan, a professor in the department of chemical engineering and applied chemistry in the Faculty of Applied Science & Engineering, and Penney Gilbert, an associate professor at the Institute of Biomedical Engineering; Sid Goyal, a professor at the department of physics in the Faculty of Arts & Science; Professor David Kaplan and Assistant Professor Yun Li, both in the Temerty Faculty of Medicine and a senior scientist and a scientist, respectively, at SickKids; stem cell biologist Cindi Morshead, a professor and chair of the division of anatomy in the department of surgery in the Temerty Faculty of Medicine; and Peter Zandstra, a University Professor in the Faculty of Applied Science & Engineering and director of Michael Smith Laboratories at the University of British Columbia.

Miller says Medicine by Design’s contribution in bringing teams like hers together is immeasurable.

“There are tangible results you can measure like publications and other grants and clinical trials,” Miller says. “But there are a lot of intangible things Medicine by Design brings to the table like developing a culture of people from very diverse places and allowing them to do science together at a time when the biggest breakthroughs are going to be made by combining technological and biological approaches. It’s hard to do that if you’re on your own.”

This large, interdisciplinary team effort combines data and computer modelling to look at individual stem cells in the brain and predict their behaviours. Through experimentation, they can then test if the cells behave the way they predicted, which Miller says they have had great success with. From there, the team casts a wide net, testing various ways to try to control cells’ behaviour with the end goal of convincing the stem cells to turn into cells that aid in healing and repair.

One approach they use is testing already approved pharmaceuticals to see if they have the desired effect on the stem cells’ behaviour. This approach has had success. In summer 2020, Morshead, Miller and their collaborators, led by Donald Mabbott, a SickKids senior scientist and professor in the department of psychology in the Faculty of Arts & Science, published a paper in Nature Medicine that showed that metformin, a common diabetes drug, has the potential to reverse brain injury in children who had had cranial radiation as a curative therapy for brain tumours.

Miller says that, to her knowledge, this is the first paper that demonstrates that this type of brain repair is possible in humans.

See the full article here .

five-ways-keep-your-child-safe-school-shootings

Please help promote STEM in your local schools.

Stem Education Coalition

The University of Toronto (CA) is a public research university in Toronto, Ontario, Canada, located on the grounds that surround Queen’s Park. It was founded by royal charter in 1827 as King’s College, the oldest university in the province of Ontario. Originally controlled by the Church of England, the university assumed its present name in 1850 upon becoming a secular institution. As a collegiate university, it comprises eleven colleges each with substantial autonomy on financial and institutional affairs and significant differences in character and history. The university also operates two satellite campuses located in Scarborough and Mississauga.
University of Toronto has evolved into Canada’s leading institution of learning, discovery and knowledge creation. We are proud to be one of the world’s top research-intensive universities, driven to invent and innovate.
Our students have the opportunity to learn from and work with preeminent thought leaders through our multidisciplinary network of teaching and research faculty, alumni and partners.
The ideas, innovations and actions of more than 560,000 graduates continue to have a positive impact on the world.
Academically, the University of Toronto is noted for movements and curricula in literary criticism and communication theory, known collectively as the Toronto School. The university was the birthplace of insulin and stem cell research, and was the site of the first electron microscope in North America, the identification of the first black hole Cygnus X-1, multi-touch technology, and the development of the theory of NP-completeness. The university was one of several universities involved in early research of deep learning. It receives the most annual scientific research funding of any Canadian university and is one of two members of the Association of American Universities outside the United States, the other being McGill University.
The Varsity Blues are the athletic teams that represent the university in intercollegiate league matches, with ties to gridiron football, rowing and ice hockey. The earliest recorded instance of gridiron football occurred at University of Toronto’s University College in November 1861. The university’s Hart House is an early example of the North American student centre, simultaneously serving cultural, intellectual, and recreational interests within its large Gothic-revival complex.
The University of Toronto has educated three Governors General of Canada, four Prime Ministers of Canada, three foreign leaders, and fourteen Justices of the Supreme Court. As of March 2019, ten Nobel laureates, five Turing Award winners, 94 Rhodes Scholars, and one Fields Medalist have been affiliated with the university.

From Sonoma State University: “Sonoma State receives near $5 million from NASA to engage autistic learners in STEM”

From From Sonoma State University

January 26, 2021

Nate Galvan
galvanna@sonoma.edu

Sonoma State University has been awarded $4.96 million from NASA to design and implement a program that will engage students on the autism spectrum in informal STEM learning.

NASA’s Neurodiversity Network (N3) aims to broaden participation in NASA programs to include autistic and other learners with neurological differences. As part of NASA’s Science Activation Program, which is composed of teams across the nation to help learners of all ages and abilities do science, N3 will use specific learning modules to support autistic learners with the social and technical skills needed for successful STEM careers.

“I really got inspired to pursue this opportunity because everywhere I turn there seems to be autism,” said professor Lynn Cominsky, who authored the cooperative agreement application and is also the director of EdEon STEM Learning at SSU – a center meant to inspire students to pursue STEM careers. “NASA has done so much for every other demographic group, but this award is very important because research has shown how autistic learners can be so talented in STEM fields.”

Over a five-year period, hundreds of high school autistic learners in both California and New York City will engage in informal NASA activities, including building and launching rocket payloads and using SSU’s NASA funded telescope. One of the California high schools that will participate in the program is the Anova Center for Education in Santa Rosa.

“Anova is proud to be a founding partner in the NASA Neurodiversity Network along with Sonoma State University and several other excellent Bay Area schools,” said Andrew Bailey, the founding director of Anova. “Autism can be a valuable type of ‘neurological diversity’ when the autistic individual is able to participate in the pursuit of happiness unhindered by the disabling roadblocks of a divergent mind. The N3 project is an exciting opportunity for our Anova students and the entire autism community.”

As part of the program, NASA will provide subject matter experts to work as mentors for sets of students that are highly motivated in working with the curriculum. “By introducing students to NASA science, autistic learners will not only gain knowledge for future accomplishments in STEM, but it will also promote growth in their social skills and self-efficacy,” Cominsky said.

Among the program’s special consultants is Dan Swearingen, one of Cominsky’s former students from more than 25 years ago. Swearingen, who himself is autistic as well as his son, founded a program to help young adults with autism or other neurological differences to ease their transition to an independent adulthood.

“The staff and students at Autistry are excited about the NASA Neurodiversity Network,” said Dan Swearingen, who co-founded Autistry Studios with his wife Janet Lawson in Marin County. “This is a fabulous opportunity, and a rare one, for autistic students to explore STEM learning. Dr. Cominsky’s energy and ability to inspire scientific curiosity put me on the path to pursue astrophysics, and I am confident she will give this gift to our students as well.”

Other partners in the N3 team are Wendy Martin and Ariana Riccio from the nonprofit Education Development Center; Sylvia Perez and Georgette Williams from the New York Hall of Science; and Laura Peticolas, EdEon’s Associate Director. Along with Anova, other Bay Area high schools will also be participating as partners, including Oak Hill School in San Anselmo, Stanbridge Academy in San Mateo, and the Orion Academy in Moraga. The internship program that N3 will be implementing was inspired by the successful program at Orion that partners their students with scientists from the Lawrence Livermore National Laboratory in STEM-related projects.

The program began this month with the NASA Kickoff meeting for the SciAct program. Cominsky said they are currently co-developing NASA resources with autistic learners to ensure they create learning opportunities that meet their needs. For more information about NASA’s Science Activation Program, visit https://science.nasa.gov/learners.

See the full article here.

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Please help promote STEM in your local schools.

Stem Education Coalition

Sonoma State University is a public university in Rohnert Park in Sonoma County, California. It is one of the smallest members of the California State University (CSU) system. Sonoma State offers 92 Bachelor’s degrees, 19 Master’s degrees, and 11 teaching credentials.The university is a Hispanic-serving institution.

Sonoma State College was established by the California State Legislature in 1960 to be part of the California State College system, with significant involvement of the faculty from San Francisco State University. As with all California State Colleges, Sonoma State later became part of the California State University system. Sonoma opened for the first time in 1961, with an initial enrollment of 250 students. Classes offered took place in leased buildings in Rohnert Park where the college offered its first four-year Bachelor of Arts degree in Elementary Education. With the completion of its two main classroom halls, Stevenson Hall, named for politician Adlai Stevenson II, and Darwin Hall, named for Charles Darwin, the college moved to its permanent campus of 215 acres (87 ha) in 1966 where the first graduating class received their degrees.

Early development

As enrollment increased, Sonoma State built more on-campus facilities, including Ives Hall for performing arts, The University Commons for dining, a small library, and a gymnasium. These buildings followed the physical master plan of the school which stated that the facilities would be urban in character, defining the use of smooth concrete building façades with landscaped courtyards. Among the landscaping features added with these facilities were the “Campus Lakes”, two small reservoirs located behind the Commons next to Commencement Lawn, the site of the university’s annual commencement ceremonies, as well as one lake near a housing facility, Beaujolais Village; the lakes are home to local waterfowl.

In 1969, the first master’s degrees in biology and psychology were offered. The new cluster school concept, coupled with a more intense focus on the surrounding rural environment, influenced the new physical master plan. The first facility built under the new plan was the Zinfandel residence area. The new Student Health Center used a primarily redwood façade with a landscaped ground cover of wild roses and poppies. Sonoma State was closed from May 7–11, 1970 after Governor Ronald Reagan ordered that all California colleges and universities shut down due to anti-war protests and rallies after the shootings of four students at Kent State University. In 1975, Nichols Hall was built as the newest classroom hall and named in honor of Sonoma’s founding president, Ambrose R. Nichols.

Early development of the modern campus came to a close in 1976 when the Student Union was constructed between the main quad and the lakes. This building continued the use of the physical master plan, using primarily redwood and preceded the similarly built Carson Hall, an art building, a childcare center, additional parking, and a computer center which was added onto the library.

The modern university

In 1978, Sonoma State College became Sonoma State University when the school officially gained university status. In response to this achievement, the surrounding community provided funds for the new university to build a large swimming pool, completed in 1982, and the 500-seat Evert Person Theatre, 1989 and which dominates the view when entering campus through the main drive. Further enrollment increases and a new goal of movement toward a residential campus as opposed to a commuter campus facilitated the building of Verdot Village in 1995.

21st-century expansion

In May 2001, the Board of Trustees approved a new master plan, which added 48 acres (19 ha) to the campus, located north of Copeland Creek. Rapidly accelerated growth of the residential student body was alleviated by the construction of the third phase of on-campus housing named Sauvignon Village, offering housing to non-freshman students. In the same year, the Jean and Charles Schulz Information Center was completed to accommodate the expanded needs of the library and computing services. The facility was built as a prototype library and information complex for the 21st century, housing more than 400,000 volumes in its stacks. The center also houses an advanced Automated Retrieval System (ARS) which contains an additional 750,000 volumes in a computer-managed shelving system in the library wing.

From University of Washington: “Researchers use lasers and molecular tethers to create perfectly patterned platforms for tissue engineering”

From University of Washington

January 18, 2021
James Urton

Top view of a collagen hydrogel that researchers decorated with immobilized mCherry proteins, which glow red under fluorescent light. The team shined UV light on the hydrogel through a mask cut out in the shape of a former University of Washington logo. Black regions were masked from the light, and so the mCherry protein did not adhere to those portions of the hydrogel. Scale bar is 50 micrometers.Batalov et al., PNAS, 2021.

Top view of two collagen hydrogels that researchers decorated with immobilized mCherry proteins, which glow red under fluorescent light. The team scanned near-infrared lasers in the shapes of a monster (left) and the Space Needle (right) to create these patterns. Black regions were not scanned with the laser, and so the mCherry protein did not adhere to those portions of the hydrogel. Scale bar is 50 micrometers.Batalov et al., PNAS, 2021.

The team used near-infrared lasers to create this intricate pattern in the shape of a human heart of immobilized mCherry proteins, which glow red under fluorescent light, within a collagen hydrogel. On the left is a composite image of 3D slices from the gel. On the right are cross-sectional views of the mCherry patterns. Scale bar is 50 micrometers.Batalov et al., PNAS, 2021.

This is a top view of a cylindrical fibrin hydrogel. By design, the right side of the hydrogel contains immobilized Delta-1 proteins, which activate Notch signaling pathways within cells. The left side does not contain immobilized Delta-1 (see insert). The team introduced human bone cancer cells, which were engineered to glow when their Notch signaling pathways are activated, into the hydrogel. The right side of the hydrogel glows brightly, indicating that cells in that region have activated their Notch signaling pathways. Cells on the left side of the hydrogel have not. Scale bar is 1 millimeter.Batalov et al., PNAS, 2021.

Imagine going to a surgeon to have a diseased or injured organ switched out for a fully functional, laboratory-grown replacement. This remains science fiction and not reality because researchers today struggle to organize cells into the complex 3D arrangements that our bodies can master on their own.

There are two major hurdles to overcome on the road to laboratory-grown organs and tissues. The first is to use a biologically compatible 3D scaffold in which cells can grow. The second is to decorate that scaffold with biochemical messages in the correct configuration to trigger the formation of the desired organ or tissue.

In a major step toward transforming this hope into reality, researchers at the University of Washington have developed a technique to modify naturally occurring biological polymers with protein-based biochemical messages that affect cell behavior. Their approach, published the week of Jan. 18 in the PNAS, uses a near-infrared laser to trigger chemical adhesion of protein messages to a scaffold made from biological polymers such as collagen, a connective tissue found throughout our bodies.

Mammalian cells responded as expected to the adhered protein signals within the 3D scaffold, according to senior author Cole DeForest, a UW associate professor of chemical engineering and of bioengineering. The proteins on these biological scaffolds triggered changes to messaging pathways within the cells that affect cell growth, signaling and other behaviors.

These methods could form the basis of biologically based scaffolds that might one day make functional laboratory-grown tissues a reality, said DeForest, who is also a faculty member with the UW Molecular Engineering and Sciences Institute and the UW Institute for Stem Cell and Regenerative Medicine.

“This approach provides us with the opportunities we’ve been waiting for to exert greater control over cell function and fate in naturally derived biomaterials — not just in three-dimensional space but also over time,” said DeForest. “Moreover, it makes use of exceptionally precise photochemistries that can be controlled in 4D while uniquely preserving protein function and bioactivity.”

DeForest’s colleagues on this project are lead author Ivan Batalov, a former UW postdoctoral researcher in chemical engineering and bioengineering, and co-author Kelly Stevens, a UW assistant professor of bioengineering and of laboratory medicine and pathology.

Their method is a first for the field, spatially controlling cell function inside naturally occurring biological materials as opposed to those that are synthetically derived. Several research groups, including DeForest’s, have developed light-based methods to modify synthetic scaffolds with protein signals. But natural biological polymers can be a more attractive scaffold for tissue engineering because they innately possess biochemical characteristics that cells rely on for structure, communication and other purposes.

“A natural biomaterial like collagen inherently includes many of the same signaling cues as those found in native tissue,” said DeForest. “In many cases, these types of materials keep cells ‘happier’ by providing them with similar signals to those they would encounter in the body.”

They worked with two types of biological polymers: collagen and fibrin, a protein involved in blood clotting. They assembled each into fluid-filled scaffolds known as hydrogels.

The signals that the team added to the hydrogels are proteins, one of the main messengers for cells. Proteins come in many forms, all with their own unique chemical properties. As a result, the researchers designed their system to employ a universal mechanism to attach proteins to a hydrogel — the binding between two chemical groups, an alkoxyamine and an aldehyde. Prior to hydrogel assembly, they decorated the collagen or fibrin precursors with alkoxyamine groups, all physically blocked with a “cage” to prevent the alkoxyamines from reacting prematurely. The cage can be removed with ultraviolet light or a near-infrared laser.

Using methods previously developed in DeForest’s laboratory, the researchers also installed aldehyde groups to one end of the proteins they wanted to attach to the hydrogels. They then combined the aldehyde-bearing proteins with the alkoxyamine-coated hydrogels, and used a brief pulse of light to remove the cage covering the alkoxyamine. The exposed alkoxyamine readily reacted with the aldehyde group on the proteins, tethering them within the hydrogel. The team used masks with patterns cut into them, as well as changes to the laser scan geometries, to create intricate patterns of protein arrangements in the hydrogel — including an old UW logo, Seattle’s Space Needle, a monster and the 3D layout of the human heart.

The tethered proteins were fully functional, delivering desired signals to cells. Rat liver cells — when loaded onto collagen hydrogels bearing a protein called EGF, which promotes cell growth — showed signs of DNA replication and cell division. In a separate experiment, the researchers decorated a fibrin hydrogel with patterns of a protein called Delta-1, which activates a specific pathway in cells called Notch signaling. When they introduced human bone cancer cells into the hydrogel, cells in the Delta-1-patterned regions activated Notch signaling, while cells in areas without Delta-1 did not.

These experiments with multiple biological scaffolds and protein signals indicate that their approach could work for almost any type of protein signal and biomaterial system, DeForest said.

“Now we can start to create hydrogel scaffolds with many different signals, utilizing our understanding of cell signaling in response to specific protein combinations to modulate critical biological function in time and space,” he added.

With more-complex signals loaded on to hydrogels, scientists could then try to control stem cell differentiation, a key step in turning science fiction into science fact.

The research was funded by the National Science Foundation, the National Institutes of Health and Gree Real Estate.

See the full article here .

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Please help promote STEM in your local schools.

Stem Education Coalition

The University of Washington is one of the world’s preeminent public universities. Our impact on individuals, on our region, and on the world is profound — whether we are launching young people into a boundless future or confronting the grand challenges of our time through undaunted research and scholarship. Ranked number 10 in the world in Shanghai Jiao Tong University rankings and educating more than 54,000 students annually, our students and faculty work together to turn ideas into impact and in the process transform lives and our world. For more about our impact on the world, every day.
So what defines us —the students, faculty and community members at the University of Washington? Above all, it’s our belief in possibility and our unshakable optimism. It’s a connection to others, both near and far. It’s a hunger that pushes us to tackle challenges and pursue progress. It’s the conviction that together we can create a world of good. Join us on the journey.